Variant report

Variant	rs12683974
Chromosome Location	chr9:101871741-101871742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101869195..101872022-chr9:101900402..101902081,2	K562	blood:
2	chr9:101550931..101552651-chr9:101871439..101873531,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10988726	1.00[CHB][hapmap]
rs10988727	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10988728	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11568750	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11568795	1.00[CHB][hapmap]
rs11568811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7033283	0.89[ASN][1000 genomes]
rs7034462	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868400-101871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:101868400-101872200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:101868400-101872600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:101868400-101881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:101868600-101889800	Weak transcription	Ovary	ovary
7	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:101868800-101873600	Enhancers	Primary B cells from peripheral blood	blood
9	chr9:101868800-101875800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:101869000-101872400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:101869200-101872600	Enhancers	HSMM	muscle
12	chr9:101869200-101881600	Weak transcription	Fetal Intestine Small	intestine
13	chr9:101869200-101884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:101869400-101872200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:101869400-101873200	Enhancers	Colon Smooth Muscle	Colon
16	chr9:101869400-101874400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:101869400-101876000	Weak transcription	Stomach Mucosa	stomach
18	chr9:101869400-101876800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:101869400-101876800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:101869600-101874200	Weak transcription	Gastric	stomach
21	chr9:101869600-101879400	Weak transcription	Placenta	Placenta
22	chr9:101869800-101872000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:101869800-101872800	Enhancers	Primary hematopoietic stem cells	blood
24	chr9:101869800-101874200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:101869800-101874200	Enhancers	Dnd41	blood
26	chr9:101869800-101884800	Weak transcription	A549	lung
27	chr9:101870000-101874000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr9:101870000-101874000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:101870000-101874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:101870000-101874600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:101870000-101874800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr9:101870000-101876200	Weak transcription	Brain Hippocampus Middle	brain
33	chr9:101870000-101876400	Weak transcription	Liver	Liver
34	chr9:101870000-101879800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
36	chr9:101870200-101871800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:101870200-101872200	Enhancers	Primary T cells fromperipheralblood	blood
38	chr9:101870200-101872200	Enhancers	Rectal Smooth Muscle	rectum
39	chr9:101870200-101872400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:101870200-101872400	Enhancers	Adipose Nuclei	Adipose
41	chr9:101870200-101874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:101870200-101874200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr9:101870200-101874400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr9:101870200-101874600	Weak transcription	Brain Angular Gyrus	brain
45	chr9:101870200-101874800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr9:101870200-101875000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr9:101870200-101875200	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr9:101870200-101875200	Weak transcription	Right Ventricle	heart
49	chr9:101870200-101875400	Weak transcription	Hela-S3	cervix
50	chr9:101870200-101876000	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links