Variant report

Variant	rs7034462
Chromosome Location	chr9:101858201-101858202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10988726	1.00[CHB][hapmap]
rs10988727	1.00[CHB][hapmap]
rs10988728	1.00[CHB][hapmap]
rs11466456	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11568750	1.00[CHB][hapmap]
rs11568756	1.00[YRI][hapmap]
rs11568785	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11568795	1.00[CHB][hapmap]
rs11568803	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12683974	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12686783	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs16918322	0.90[AFR][1000 genomes]
rs7033283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7034867	0.97[AFR][1000 genomes]
rs7035064	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7850895	1.00[ASW][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7859820	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7860686	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs928180	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101846200-101858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101851800-101858400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:101854600-101860400	Enhancers	K562	blood
4	chr9:101855000-101859000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:101855800-101861400	Weak transcription	Dnd41	blood
6	chr9:101856200-101861400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:101856200-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:101856400-101860600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:101856400-101861400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr9:101856400-101861600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:101856400-101861600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:101856400-101865600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:101856400-101865800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:101856400-101865800	Weak transcription	Placenta	Placenta
15	chr9:101857200-101859600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:101857600-101858400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr9:101857600-101859400	Enhancers	Fetal Thymus	thymus
18	chr9:101857800-101858400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr9:101857800-101858800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:101857800-101858800	Enhancers	Primary T cells from cord blood	blood
21	chr9:101857800-101859000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:101857800-101859600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:101858000-101859600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:101858000-101863400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr9:101858200-101866000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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