Variant report

Variant	rs11568785
Chromosome Location	chr9:101905834-101905835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101899920..101901969-chr9:101905038..101907406,2	K562	blood:
2	chr9:101865858..101869567-chr9:101901452..101906002,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11466456	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11568756	1.00[YRI][hapmap]
rs11568803	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16918322	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7033283	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7034462	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7034867	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7035064	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7850895	0.87[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7859820	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7860686	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs928180	0.87[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1792736	chr9:101891126-101909372	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101888200-101907000	Weak transcription	HepG2	liver
3	chr9:101890000-101914200	Weak transcription	Pancreas	Pancrea
4	chr9:101890200-101907600	Weak transcription	Gastric	stomach
5	chr9:101890400-101908400	Weak transcription	Hela-S3	cervix
6	chr9:101890600-101907000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:101890600-101908800	Weak transcription	Right Ventricle	heart
8	chr9:101892600-101914200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:101892800-101921000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:101894200-101906800	Weak transcription	Fetal Kidney	kidney
11	chr9:101894200-101907600	Weak transcription	HUVEC	blood vessel
12	chr9:101895000-101907200	Weak transcription	Spleen	Spleen
13	chr9:101895000-101914200	Weak transcription	Esophagus	oesophagus
14	chr9:101897600-101907400	Weak transcription	HMEC	breast
15	chr9:101897600-101913400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:101897600-101915400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:101897800-101906800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:101898000-101907000	Weak transcription	NHLF	lung
19	chr9:101898000-101907200	Weak transcription	Small Intestine	intestine
20	chr9:101898000-101907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:101898000-101907400	Weak transcription	Brain Angular Gyrus	brain
22	chr9:101898000-101907400	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:101898000-101907400	Weak transcription	Brain Substantia Nigra	brain
24	chr9:101898000-101912200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:101898000-101919400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:101898200-101906000	Weak transcription	Fetal Brain Male	brain
27	chr9:101899000-101906800	Weak transcription	Fetal Thymus	thymus
28	chr9:101899000-101913000	Strong transcription	HSMM	muscle
29	chr9:101899400-101908000	Weak transcription	Colonic Mucosa	Colon
30	chr9:101899400-101913000	Weak transcription	Thymus	Thymus
31	chr9:101900200-101914800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr9:101900200-101915200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:101900800-101916800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr9:101901200-101908000	Weak transcription	Psoas Muscle	Psoas
35	chr9:101901800-101907000	Weak transcription	Ovary	ovary
36	chr9:101901800-101912000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:101902200-101906000	Strong transcription	NHEK	skin
38	chr9:101902200-101911200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:101902800-101914200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:101902800-101915400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr9:101903000-101911000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:101903000-101911800	Strong transcription	Fetal Muscle Leg	muscle
43	chr9:101903000-101915200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr9:101903000-101921800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr9:101903200-101906000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:101903200-101907000	Weak transcription	Brain Anterior Caudate	brain
47	chr9:101903200-101910400	Strong transcription	K562	blood
48	chr9:101903200-101911000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:101903200-101912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:101903200-101912000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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