Variant report

Variant	rs7859820
Chromosome Location	chr9:101928280-101928281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11466456	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11568785	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11568803	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16918322	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7033283	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7034462	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7034867	0.85[AFR][1000 genomes]
rs7035064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7850895	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7860686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs928180	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:101914800-101929800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr9:101916000-101929600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:101922400-101930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:101922600-101930600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:101922800-101930000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:101922800-101932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:101925200-101929400	Weak transcription	K562	blood
9	chr9:101925400-101930000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:101925600-101928400	Weak transcription	Primary T cells from cord blood	blood
11	chr9:101925800-101929600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:101926400-101930800	Enhancers	GM12878-XiMat	blood
13	chr9:101927800-101930800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:101928000-101928800	Enhancers	Thymus	Thymus
15	chr9:101928000-101930400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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