Variant report

Variant	rs7035064
Chromosome Location	chr9:101931740-101931741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101918300..101922228-chr9:101930528..101933247,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11466456	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11568756	1.00[YRI][hapmap]
rs11568785	0.87[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11568803	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12686783	0.82[TSI][hapmap]
rs16918322	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7033283	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7034462	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7034867	0.85[AFR][1000 genomes]
rs7850895	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7859820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7860686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs928180	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:101922800-101932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:101929600-101932200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:101929800-101933600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:101930000-101931800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:101930000-101932400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:101930000-101932400	Weak transcription	K562	blood
8	chr9:101930000-101933000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:101930400-101932400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:101930400-101933200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr9:101930400-101936600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:101930600-101931800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:101930600-101932400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:101930800-101936000	Weak transcription	GM12878-XiMat	blood
15	chr9:101931000-101932000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:101931000-101933800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:101931400-101932400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:101931400-101935400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:101931400-101937000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:101931600-101931800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr9:101931600-101932600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:101931600-101933000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr9:101931600-101933400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr9:101931600-101934200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:101931600-101934400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:101931600-101947000	Weak transcription	Right Atrium	heart

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