Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101860505..101863110-chr9:101867060..101868859,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10739778	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs10760667	0.92[ASN][1000 genomes]
rs10760670	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs10819635	0.91[CHB][hapmap];0.93[CHD][hapmap];0.92[ASN][1000 genomes]
rs10988706	0.81[CHB][hapmap]
rs10988713	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs12686782	0.87[ASN][1000 genomes]
rs1571589	1.00[CHB][hapmap]
rs1590	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs1888223	0.92[ASN][1000 genomes]
rs2026811	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs334348	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs334349	1.00[CHB][hapmap]
rs334355	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs6478972	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs7022989	0.85[CHB][hapmap]
rs7031302	1.00[CHB][hapmap]
rs7033283	0.90[EUR][1000 genomes]
rs7034462	0.86[EUR][1000 genomes]
rs7043624	1.00[CHB][hapmap]
rs7850895	0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101856200-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:101856400-101865600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:101856400-101865800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:101856400-101865800	Weak transcription	Placenta	Placenta
5	chr9:101858000-101863400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:101858200-101866000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:101858800-101866200	Weak transcription	Primary T cells from cord blood	blood
8	chr9:101859400-101863200	Weak transcription	Fetal Thymus	thymus
9	chr9:101859400-101866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:101860600-101862200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:101861400-101862200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:101861400-101862400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:101861400-101862400	Enhancers	Dnd41	blood
14	chr9:101861600-101862000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr9:101861600-101862200	Enhancers	Primary T helper cells PMA-I stimulated	--

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