Variant report

Variant	rs12686782
Chromosome Location	chr9:101861680-101861681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10760667	0.80[ASN][1000 genomes]
rs10819634	0.92[ASN][1000 genomes]
rs10819635	0.80[ASN][1000 genomes]
rs10819636	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10819640	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10988709	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10988713	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10988715	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10988717	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11568752	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11568753	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11568770	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11568778	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346650	0.91[ASN][1000 genomes]
rs12685571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12686783	0.87[ASN][1000 genomes]
rs1888223	0.80[ASN][1000 genomes]
rs1888225	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3739798	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101856200-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:101856400-101865600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:101856400-101865800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:101856400-101865800	Weak transcription	Placenta	Placenta
5	chr9:101858000-101863400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:101858200-101866000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:101858800-101866200	Weak transcription	Primary T cells from cord blood	blood
8	chr9:101859400-101863200	Weak transcription	Fetal Thymus	thymus
9	chr9:101859400-101866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:101860600-101862200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:101861400-101862200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:101861400-101862400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:101861400-101862400	Enhancers	Dnd41	blood
14	chr9:101861600-101862000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr9:101861600-101862200	Enhancers	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links