Variant report

Variant	rs10760667
Chromosome Location	chr9:101864607-101864608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr9:101864236-101864612	K562	blood:	n/a	n/a
2	FOXA1	chr9:101864177-101864817	A549	lung:	n/a	chr9:101864621-101864633
3	FOXA1	chr9:101864283-101864848	A549	lung:	n/a	chr9:101864621-101864633

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101764079..101766905-chr9:101863194..101865168,2	MCF-7	breast:

Variant related genes	Relation type
TGFBR1	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10733708	0.87[ASN][1000 genomes]
rs10733709	0.88[AMR][1000 genomes]
rs10739778	0.85[ASN][1000 genomes]
rs10760668	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10760669	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10760670	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10760671	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10760672	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10760673	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10819634	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10819635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819638	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10988706	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10988716	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12346650	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12686782	0.80[ASN][1000 genomes]
rs12686783	0.92[ASN][1000 genomes]
rs13286149	0.88[EUR][1000 genomes]
rs1571589	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1590	0.83[ASN][1000 genomes]
rs1626340	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1699413	0.88[AMR][1000 genomes]
rs1888223	1.00[ASN][1000 genomes]
rs2026811	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs334348	0.83[ASN][1000 genomes]
rs334349	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs334354	0.88[AMR][1000 genomes]
rs334355	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs334362	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs367568	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs383496	0.81[ASN][1000 genomes]
rs401186	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs44466	0.81[AMR][1000 genomes]
rs597457	0.88[AMR][1000 genomes]
rs6478972	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6478973	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7031302	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031309	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7043624	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7874221	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101856200-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:101856400-101865600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:101856400-101865800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:101856400-101865800	Weak transcription	Placenta	Placenta
5	chr9:101858200-101866000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr9:101858800-101866200	Weak transcription	Primary T cells from cord blood	blood
7	chr9:101859400-101866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101862200-101865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:101862400-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:101862400-101866200	Weak transcription	Dnd41	blood
11	chr9:101863400-101865800	Enhancers	NHEK	skin
12	chr9:101863400-101866000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:101863400-101866000	Weak transcription	Fetal Thymus	thymus
14	chr9:101863600-101865600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:101863600-101866000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:101863600-101866200	Enhancers	K562	blood
17	chr9:101863800-101865000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:101863800-101865800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:101864400-101866600	Enhancers	Stomach Mucosa	stomach
20	chr9:101864600-101865000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:101864600-101865200	Enhancers	A549	lung
22	chr9:101864600-101865800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:101864600-101866200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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