Variant report

Variant	rs13286149
Chromosome Location	chr9:101862688-101862689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101860505..101863110-chr9:101867060..101868859,3	MCF-7	breast:
2	chr9:101858348..101860739-chr9:101862430..101863994,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1013186	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283455	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10448292	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10733709	0.81[EUR][1000 genomes]
rs10739779	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760667	0.88[EUR][1000 genomes]
rs10760668	0.86[EUR][1000 genomes]
rs10760669	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10760671	0.85[EUR][1000 genomes]
rs10760672	0.85[EUR][1000 genomes]
rs10760673	0.85[EUR][1000 genomes]
rs10760674	0.91[AFR][1000 genomes]
rs10819634	0.94[EUR][1000 genomes]
rs10819635	0.88[EUR][1000 genomes]
rs10819637	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819638	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10819639	1.00[ASN][1000 genomes]
rs10988703	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988706	0.85[EUR][1000 genomes]
rs10988714	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988716	0.85[EUR][1000 genomes]
rs12345675	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12346650	0.95[EUR][1000 genomes]
rs1571590	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334350	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs334356	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334357	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334358	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334368	0.86[ASN][1000 genomes]
rs334369	1.00[ASN][1000 genomes]
rs385057	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs420549	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478061	1.00[ASN][1000 genomes]
rs6478973	0.85[EUR][1000 genomes]
rs7874221	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs789675	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101856200-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:101856400-101865600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:101856400-101865800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:101856400-101865800	Weak transcription	Placenta	Placenta
5	chr9:101858000-101863400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:101858200-101866000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:101858800-101866200	Weak transcription	Primary T cells from cord blood	blood
8	chr9:101859400-101863200	Weak transcription	Fetal Thymus	thymus
9	chr9:101859400-101866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:101862000-101863200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:101862200-101865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr9:101862400-101863000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:101862400-101866200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:101862400-101866200	Weak transcription	Dnd41	blood
15	chr9:101862600-101863800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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