Variant report

Variant	rs10819639
Chromosome Location	chr9:101894361-101894362
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101865542..101868917-chr9:101887238..101894962,8	MCF-7	breast:
2	chr9:101892307..101894451-chr9:101895329..101898067,2	K562	blood:
3	chr9:101894017..101896453-chr9:101898927..101901266,2	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1013186	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10283455	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10448292	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733709	0.95[CEU][hapmap]
rs10739779	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10760670	0.89[CEU][hapmap]
rs10760671	0.95[CEU][hapmap]
rs10760672	0.95[CEU][hapmap]
rs10760673	0.94[CEU][hapmap]
rs10760674	0.96[EUR][1000 genomes]
rs10819637	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10819638	0.95[CEU][hapmap]
rs10988703	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10988706	0.94[CEU][hapmap]
rs10988714	1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10988716	0.95[CEU][hapmap]
rs10988723	0.95[EUR][1000 genomes]
rs12345675	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13286149	1.00[ASN][1000 genomes]
rs1571589	0.90[CEU][hapmap]
rs1571590	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1590	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1973518	0.91[EUR][1000 genomes]
rs2026811	0.89[CEU][hapmap]
rs334348	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs334349	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs334350	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs334351	0.92[EUR][1000 genomes]
rs334353	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs334354	0.94[CEU][hapmap]
rs334355	0.89[CEU][hapmap]
rs334356	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs334357	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs334358	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs334366	0.91[EUR][1000 genomes]
rs334368	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334369	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383496	0.87[EUR][1000 genomes]
rs385057	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs420549	0.94[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs478061	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597457	0.95[CEU][hapmap]
rs6478972	0.89[CEU][hapmap]
rs7031302	0.83[CEU][hapmap]
rs7042852	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7874221	0.94[CEU][hapmap]
rs789675	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs868	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1792736	chr9:101891126-101909372	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:101875600-101894600	Weak transcription	Spleen	Spleen
5	chr9:101876600-101904200	Weak transcription	Liver	Liver
6	chr9:101878000-101897400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:101878800-101903200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:101882000-101895000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr9:101882200-101901400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr9:101882200-101903000	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:101882400-101894600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:101883000-101900000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:101884600-101897200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:101884800-101894400	Weak transcription	Aorta	Aorta
15	chr9:101885200-101896800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:101885200-101901600	Weak transcription	A549	lung
17	chr9:101888200-101907000	Weak transcription	HepG2	liver
18	chr9:101888400-101896600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:101889400-101904000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:101889600-101901000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:101889800-101904400	Weak transcription	Lung	lung
22	chr9:101890000-101894400	Weak transcription	Esophagus	oesophagus
23	chr9:101890000-101894600	Weak transcription	Left Ventricle	heart
24	chr9:101890000-101897800	Weak transcription	Small Intestine	intestine
25	chr9:101890000-101900800	Weak transcription	Fetal Intestine Small	intestine
26	chr9:101890000-101914200	Weak transcription	Pancreas	Pancrea
27	chr9:101890200-101896600	Weak transcription	NHLF	lung
28	chr9:101890200-101904800	Weak transcription	Fetal Intestine Large	intestine
29	chr9:101890200-101907600	Weak transcription	Gastric	stomach
30	chr9:101890400-101894400	Weak transcription	Adipose Nuclei	Adipose
31	chr9:101890400-101896800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:101890400-101908400	Weak transcription	Hela-S3	cervix
33	chr9:101890600-101894400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:101890600-101894400	Weak transcription	HSMM	muscle
35	chr9:101890600-101894600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:101890600-101894600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr9:101890600-101896600	Weak transcription	HSMMtube	muscle
38	chr9:101890600-101896800	Weak transcription	Fetal Brain Male	brain
39	chr9:101890600-101896800	Weak transcription	NH-A	brain
40	chr9:101890600-101897200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:101890600-101900200	Weak transcription	Ovary	ovary
42	chr9:101890600-101900800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr9:101890600-101901600	Weak transcription	Fetal Lung	lung
44	chr9:101890600-101907000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr9:101890600-101908800	Weak transcription	Right Ventricle	heart
46	chr9:101890800-101903600	Weak transcription	Right Atrium	heart
47	chr9:101891000-101895200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr9:101891000-101900200	Weak transcription	Placenta	Placenta
49	chr9:101891400-101897200	Weak transcription	Brain Substantia Nigra	brain
50	chr9:101891400-101903600	Weak transcription	Dnd41	blood

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