Variant report

Variant	rs334351
Chromosome Location	chr9:101919002-101919003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101918300..101922228-chr9:101930528..101933247,3	K562	blood:
2	chr9:101918996..101921119-chr9:101984688..101986350,2	K562	blood:
3	chr9:101914312..101916754-chr9:101918469..101920342,3	K562	blood:
4	chr9:101910109..101913329-chr9:101915349..101919610,4	K562	blood:
5	chr9:101911700..101915310-chr9:101917488..101920239,4	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10448292	0.83[EUR][1000 genomes]
rs10733708	0.87[ASN][1000 genomes]
rs10733709	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10739778	0.85[ASN][1000 genomes]
rs10760668	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10760669	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10760670	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10760671	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10760672	0.99[ASN][1000 genomes]
rs10760673	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10760674	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10819634	0.80[ASN][1000 genomes]
rs10819636	0.95[ASN][1000 genomes]
rs10819638	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10819639	0.92[EUR][1000 genomes]
rs10819640	0.94[ASN][1000 genomes]
rs10988706	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10988709	0.95[ASN][1000 genomes]
rs10988713	0.81[ASN][1000 genomes]
rs10988715	0.95[ASN][1000 genomes]
rs10988716	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10988717	0.94[ASN][1000 genomes]
rs10988723	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11568752	0.95[ASN][1000 genomes]
rs11568753	0.87[ASN][1000 genomes]
rs11568770	0.90[ASN][1000 genomes]
rs11568778	0.91[ASN][1000 genomes]
rs12345675	0.91[EUR][1000 genomes]
rs12346650	0.84[ASN][1000 genomes]
rs12685571	0.95[ASN][1000 genomes]
rs1571589	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1590	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1626340	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1699413	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1888225	0.96[ASN][1000 genomes]
rs1973518	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2026811	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs334348	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334349	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334354	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs334355	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs334362	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs334363	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs334364	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs334365	0.82[ASN][1000 genomes]
rs334366	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs334367	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs334368	0.91[EUR][1000 genomes]
rs334369	0.91[EUR][1000 genomes]
rs334370	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs334371	0.81[ASN][1000 genomes]
rs367568	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3739798	0.96[ASN][1000 genomes]
rs383496	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs401186	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs44466	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs478061	0.91[EUR][1000 genomes]
rs597457	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6478972	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6478973	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7031302	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7031309	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7042852	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7043624	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7874221	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101892800-101921000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:101898000-101919400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:101903000-101921800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:101907200-101919800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:101908200-101922000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:101908600-101924600	Weak transcription	Gastric	stomach
7	chr9:101909000-101920000	Weak transcription	HepG2	liver
8	chr9:101910400-101920800	Weak transcription	K562	blood
9	chr9:101911000-101920600	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:101911200-101921800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:101911200-101922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:101911400-101925000	Weak transcription	Dnd41	blood
13	chr9:101911600-101922000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:101911800-101920600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:101912400-101922200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:101913000-101922000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:101913200-101921400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:101914600-101920800	Weak transcription	Esophagus	oesophagus
20	chr9:101914600-101921800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:101914800-101920600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:101914800-101921000	Weak transcription	Lung	lung
23	chr9:101914800-101921000	Weak transcription	Pancreas	Pancrea
24	chr9:101914800-101921800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:101914800-101921800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:101914800-101922000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101914800-101922000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:101914800-101925000	Weak transcription	Aorta	Aorta
29	chr9:101914800-101927600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:101914800-101929800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:101915000-101920600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:101915200-101920200	Weak transcription	A549	lung
33	chr9:101915200-101925000	Weak transcription	Primary T cells from cord blood	blood
34	chr9:101915400-101920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:101915400-101927800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr9:101915600-101921400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr9:101915800-101920800	Weak transcription	Placenta	Placenta
38	chr9:101916000-101929600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:101916200-101924600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:101916800-101920800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:101917000-101920800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:101917200-101924600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:101918000-101920000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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