Variant report

Variant	rs10988706
Chromosome Location	chr9:101870302-101870303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101869195..101872022-chr9:101900402..101902081,2	K562	blood:
2	chr9:101671905..101674026-chr9:101868875..101871020,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1013186	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10283455	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10733708	0.87[ASN][1000 genomes]
rs10733709	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739778	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10739779	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10760667	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10760668	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10760669	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760670	0.94[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10760671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760674	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10819634	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819635	0.82[CEU][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10819636	0.96[ASN][1000 genomes]
rs10819637	0.95[EUR][1000 genomes]
rs10819638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819639	0.94[CEU][hapmap]
rs10819640	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10988703	0.94[EUR][1000 genomes]
rs10988709	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988713	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs10988714	0.82[CEU][hapmap];0.95[EUR][1000 genomes]
rs10988715	1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988717	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs10988723	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11568752	1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs11568753	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs11568770	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs11568778	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs12346650	0.95[CHB][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12685571	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs12686783	0.81[CHB][hapmap]
rs13286149	0.85[EUR][1000 genomes]
rs1571589	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1571590	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1590	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1626340	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1699413	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1888225	1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs1973518	0.94[ASN][1000 genomes]
rs2026811	0.94[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334348	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs334349	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs334350	0.85[EUR][1000 genomes]
rs334351	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs334353	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs334354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334355	0.94[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334356	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs334357	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs334358	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs334362	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs334363	0.95[ASN][1000 genomes]
rs334364	0.95[ASN][1000 genomes]
rs334365	0.81[ASN][1000 genomes]
rs334366	0.95[ASN][1000 genomes]
rs334367	0.95[ASN][1000 genomes]
rs334370	0.93[ASN][1000 genomes]
rs334371	0.80[ASN][1000 genomes]
rs367568	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3739798	1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs383496	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs385057	0.85[EUR][1000 genomes]
rs401186	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs420549	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs44466	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs597457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6478972	0.94[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6478973	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031302	0.88[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031309	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7041311	0.91[CHB][hapmap]
rs7042852	0.94[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7043624	0.88[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7874221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs789675	0.86[EUR][1000 genomes]
rs868	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868000-101870600	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr9:101868200-101870600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr9:101868200-101871000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:101868200-101871200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr9:101868400-101870400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:101868400-101870600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr9:101868400-101870800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr9:101868400-101871000	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr9:101868400-101871200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:101868400-101871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:101868400-101872200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:101868400-101872600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr9:101868400-101881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:101868600-101870400	Flanking Active TSS	Osteobl	bone
16	chr9:101868600-101870800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr9:101868600-101871000	Enhancers	Fetal Heart	heart
18	chr9:101868600-101889800	Weak transcription	Ovary	ovary
19	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:101868800-101870400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr9:101868800-101870400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:101868800-101870400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:101868800-101870400	Enhancers	Brain Substantia Nigra	brain
24	chr9:101868800-101870400	Enhancers	Right Atrium	heart
25	chr9:101868800-101870600	Enhancers	Fetal Kidney	kidney
26	chr9:101868800-101870800	Enhancers	Fetal Stomach	stomach
27	chr9:101868800-101873600	Enhancers	Primary B cells from peripheral blood	blood
28	chr9:101868800-101875800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr9:101869000-101870400	Enhancers	Spleen	Spleen
30	chr9:101869000-101870800	Flanking Active TSS	GM12878-XiMat	blood
31	chr9:101869000-101871400	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr9:101869000-101872400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:101869200-101870600	Transcr. at gene 5' and 3'	K562	blood
34	chr9:101869200-101871000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr9:101869200-101871200	Weak transcription	Left Ventricle	heart
36	chr9:101869200-101872600	Enhancers	HSMM	muscle
37	chr9:101869200-101881600	Weak transcription	Fetal Intestine Small	intestine
38	chr9:101869200-101884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr9:101869400-101870400	Enhancers	Brain Anterior Caudate	brain
40	chr9:101869400-101872200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:101869400-101873200	Enhancers	Colon Smooth Muscle	Colon
42	chr9:101869400-101874400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr9:101869400-101876000	Weak transcription	Stomach Mucosa	stomach
44	chr9:101869400-101876800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:101869400-101876800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:101869600-101870400	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr9:101869600-101870400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr9:101869600-101870400	Enhancers	Duodenum Mucosa	Duodenum
49	chr9:101869600-101870400	Enhancers	Fetal Thymus	thymus
50	chr9:101869600-101870400	Active TSS	Rectal Mucosa Donor 29	rectum

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