Variant report

Variant	rs334350
Chromosome Location	chr9:101920599-101920600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101918300..101922228-chr9:101930528..101933247,3	K562	blood:
2	chr9:101873445..101875018-chr9:101919136..101920743,2	K562	blood:
3	chr9:101918996..101921119-chr9:101984688..101986350,2	K562	blood:
4	chr9:101920298..101922572-chr9:101925765..101928524,3	K562	blood:
5	chr9:101915684..101917532-chr9:101919220..101922138,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1013186	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283455	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10448292	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10733709	0.89[EUR][1000 genomes]
rs10739779	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760668	0.84[EUR][1000 genomes]
rs10760669	0.85[EUR][1000 genomes]
rs10760671	0.85[EUR][1000 genomes]
rs10760672	0.85[EUR][1000 genomes]
rs10760673	0.85[EUR][1000 genomes]
rs10819637	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819638	0.85[EUR][1000 genomes]
rs10819639	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10988703	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988706	0.85[EUR][1000 genomes]
rs10988714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988716	0.85[EUR][1000 genomes]
rs12345675	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13286149	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1571590	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626340	0.88[EUR][1000 genomes]
rs1699413	0.95[EUR][1000 genomes]
rs334354	0.91[EUR][1000 genomes]
rs334355	0.84[EUR][1000 genomes]
rs334356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334358	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334362	0.93[EUR][1000 genomes]
rs334368	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs334369	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs367568	0.89[EUR][1000 genomes]
rs385057	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401186	0.89[EUR][1000 genomes]
rs420549	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs44466	0.92[EUR][1000 genomes]
rs478061	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs597457	0.91[EUR][1000 genomes]
rs6478973	0.85[EUR][1000 genomes]
rs7874221	0.85[EUR][1000 genomes]
rs789675	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101892800-101921000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:101903000-101921800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:101908200-101922000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:101908600-101924600	Weak transcription	Gastric	stomach
5	chr9:101910400-101920800	Weak transcription	K562	blood
6	chr9:101911000-101920600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:101911200-101921800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:101911200-101922000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:101911400-101925000	Weak transcription	Dnd41	blood
10	chr9:101911600-101922000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:101911800-101920600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:101912400-101922200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:101913000-101922000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:101913200-101921400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:101914600-101920800	Weak transcription	Esophagus	oesophagus
17	chr9:101914600-101921800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:101914800-101920600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr9:101914800-101921000	Weak transcription	Lung	lung
20	chr9:101914800-101921000	Weak transcription	Pancreas	Pancrea
21	chr9:101914800-101921800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:101914800-101921800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:101914800-101922000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:101914800-101922000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr9:101914800-101925000	Weak transcription	Aorta	Aorta
26	chr9:101914800-101927600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:101914800-101929800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr9:101915000-101920600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:101915200-101925000	Weak transcription	Primary T cells from cord blood	blood
30	chr9:101915400-101927800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:101915600-101921400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:101915800-101920800	Weak transcription	Placenta	Placenta
33	chr9:101916000-101929600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:101916200-101924600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:101916800-101920800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:101917000-101920800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:101917200-101924600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:101920000-101921000	Enhancers	HepG2	liver
39	chr9:101920200-101920600	Enhancers	A549	lung
40	chr9:101920200-101921000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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