Variant report

Variant	rs10760669
Chromosome Location	chr9:101869961-101869962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101869195..101872022-chr9:101900402..101902081,2	K562	blood:
2	chr9:101671905..101674026-chr9:101868875..101871020,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1013186	0.94[EUR][1000 genomes]
rs10283455	0.89[EUR][1000 genomes]
rs10733708	0.87[ASN][1000 genomes]
rs10733709	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739778	0.86[ASN][1000 genomes]
rs10739779	0.95[EUR][1000 genomes]
rs10760667	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10760668	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10760670	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10760671	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760672	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760673	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760674	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10819634	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819635	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10819636	0.96[ASN][1000 genomes]
rs10819637	0.95[EUR][1000 genomes]
rs10819638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819640	0.94[ASN][1000 genomes]
rs10988703	0.94[EUR][1000 genomes]
rs10988706	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988709	0.96[ASN][1000 genomes]
rs10988713	0.81[ASN][1000 genomes]
rs10988714	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10988715	0.96[ASN][1000 genomes]
rs10988716	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988717	0.94[ASN][1000 genomes]
rs10988723	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11568752	0.96[ASN][1000 genomes]
rs11568753	0.88[ASN][1000 genomes]
rs11568770	0.90[ASN][1000 genomes]
rs11568778	0.90[ASN][1000 genomes]
rs12345675	0.90[AFR][1000 genomes]
rs12346650	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12685571	0.96[ASN][1000 genomes]
rs13286149	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1571589	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1571590	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1590	0.85[ASN][1000 genomes]
rs1626340	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1699413	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1888225	0.95[ASN][1000 genomes]
rs1973518	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2026811	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334348	0.85[ASN][1000 genomes]
rs334349	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs334350	0.85[EUR][1000 genomes]
rs334351	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs334353	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs334354	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334355	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334356	0.89[EUR][1000 genomes]
rs334357	0.89[EUR][1000 genomes]
rs334358	0.89[EUR][1000 genomes]
rs334362	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs334363	0.95[ASN][1000 genomes]
rs334364	0.95[ASN][1000 genomes]
rs334365	0.81[ASN][1000 genomes]
rs334366	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs334367	0.95[ASN][1000 genomes]
rs334370	0.93[ASN][1000 genomes]
rs334371	0.80[ASN][1000 genomes]
rs367568	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3739798	0.95[ASN][1000 genomes]
rs383496	0.83[ASN][1000 genomes]
rs385057	0.85[EUR][1000 genomes]
rs401186	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs420549	0.87[EUR][1000 genomes]
rs44466	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs597457	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6478972	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6478973	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031302	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031309	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7042852	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7043624	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7874221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs789675	0.86[EUR][1000 genomes]
rs868	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101867000-101870000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101867000-101870000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:101868000-101870600	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr9:101868200-101870000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr9:101868200-101870200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr9:101868200-101870200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:101868200-101870200	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr9:101868200-101870600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr9:101868200-101871000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:101868200-101871200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr9:101868400-101870200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:101868400-101870400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:101868400-101870600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr9:101868400-101870800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr9:101868400-101871000	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr9:101868400-101871200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:101868400-101871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:101868400-101872200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:101868400-101872600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr9:101868400-101881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:101868600-101870000	Weak transcription	Small Intestine	intestine
23	chr9:101868600-101870000	Enhancers	HepG2	liver
24	chr9:101868600-101870200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:101868600-101870200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr9:101868600-101870400	Flanking Active TSS	Osteobl	bone
27	chr9:101868600-101870800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:101868600-101871000	Enhancers	Fetal Heart	heart
29	chr9:101868600-101889800	Weak transcription	Ovary	ovary
30	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:101868800-101870000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:101868800-101870000	Enhancers	Fetal Muscle Leg	muscle
33	chr9:101868800-101870200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:101868800-101870200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:101868800-101870200	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr9:101868800-101870200	Flanking Active TSS	Fetal Brain Female	brain
37	chr9:101868800-101870200	Enhancers	Fetal Lung	lung
38	chr9:101868800-101870200	Enhancers	Psoas Muscle	Psoas
39	chr9:101868800-101870200	Enhancers	Right Ventricle	heart
40	chr9:101868800-101870200	Enhancers	NH-A	brain
41	chr9:101868800-101870400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr9:101868800-101870400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:101868800-101870400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:101868800-101870400	Enhancers	Brain Substantia Nigra	brain
45	chr9:101868800-101870400	Enhancers	Right Atrium	heart
46	chr9:101868800-101870600	Enhancers	Fetal Kidney	kidney
47	chr9:101868800-101870800	Enhancers	Fetal Stomach	stomach
48	chr9:101868800-101873600	Enhancers	Primary B cells from peripheral blood	blood
49	chr9:101868800-101875800	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr9:101869000-101870000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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