Variant report

Variant	rs789675
Chromosome Location	chr9:101922279-101922280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101921262..101923800-chr9:101929228..101931291,2	K562	blood:
2	chr9:101920629..101922508-chr9:101923371..101925583,4	K562	blood:
3	chr9:101920298..101922572-chr9:101925765..101928524,3	K562	blood:
4	chr9:101920629..101922508-chr9:101923371..101925010,2	K562	blood:
5	chr9:101836496..101838149-chr9:101921084..101922742,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1013186	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283455	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10448292	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10733709	0.91[EUR][1000 genomes]
rs10739779	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760668	0.85[EUR][1000 genomes]
rs10760669	0.86[EUR][1000 genomes]
rs10760671	0.86[EUR][1000 genomes]
rs10760672	0.86[EUR][1000 genomes]
rs10760673	0.86[EUR][1000 genomes]
rs10819637	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819638	0.86[EUR][1000 genomes]
rs10819639	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10988703	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988706	0.86[EUR][1000 genomes]
rs10988714	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988716	0.86[EUR][1000 genomes]
rs12345675	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13286149	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571589	0.80[EUR][1000 genomes]
rs1571590	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626340	0.90[EUR][1000 genomes]
rs1699413	0.95[EUR][1000 genomes]
rs2026811	0.80[EUR][1000 genomes]
rs334350	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334354	0.92[EUR][1000 genomes]
rs334355	0.86[EUR][1000 genomes]
rs334356	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334357	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334358	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334362	0.95[EUR][1000 genomes]
rs334368	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs334369	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs367568	0.89[EUR][1000 genomes]
rs385057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401186	0.89[EUR][1000 genomes]
rs420549	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs44466	0.92[EUR][1000 genomes]
rs478061	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs597457	0.92[EUR][1000 genomes]
rs6478972	0.80[EUR][1000 genomes]
rs6478973	0.86[EUR][1000 genomes]
rs7031309	0.80[EUR][1000 genomes]
rs7874221	0.86[EUR][1000 genomes]
rs868	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101908600-101924600	Weak transcription	Gastric	stomach
2	chr9:101911400-101925000	Weak transcription	Dnd41	blood
3	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:101914800-101925000	Weak transcription	Aorta	Aorta
5	chr9:101914800-101927600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:101914800-101929800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr9:101915200-101925000	Weak transcription	Primary T cells from cord blood	blood
8	chr9:101915400-101927800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:101916000-101929600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:101916200-101924600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:101917200-101924600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:101920800-101922400	Enhancers	K562	blood
13	chr9:101921400-101922800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:101921600-101922800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:101921800-101922400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:101921800-101922400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:101921800-101922400	Bivalent Enhancer	HUVEC	blood vessel
18	chr9:101921800-101922600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr9:101921800-101922800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:101922000-101922400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr9:101922000-101922600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr9:101922000-101922600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:101922000-101922600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:101922000-101922800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:101922200-101922400	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links