Variant report

Variant	rs10819638
Chromosome Location	chr9:101874314-101874315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101775703..101777363-chr9:101873399..101875058,2	K562	blood:
2	chr9:101873445..101875018-chr9:101919136..101920743,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1013186	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10283455	1.00[CEU][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10448292	0.86[AFR][1000 genomes]
rs10733708	0.87[ASN][1000 genomes]
rs10733709	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739778	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10739779	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10760667	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10760668	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10760669	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760670	0.94[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10760671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760674	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10819634	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10819635	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10819636	0.96[ASN][1000 genomes]
rs10819637	0.95[EUR][1000 genomes]
rs10819639	0.95[CEU][hapmap]
rs10819640	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10988703	0.94[EUR][1000 genomes]
rs10988706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988709	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988713	0.81[ASN][1000 genomes]
rs10988714	0.83[CEU][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10988715	1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs10988716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988717	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs10988723	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11568752	1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs11568753	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs11568770	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs11568778	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs12345675	0.81[AFR][1000 genomes]
rs12346650	0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12685571	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs13286149	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1571589	0.95[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1571590	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1590	0.89[CEU][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1626340	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1699413	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1888225	1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs1973518	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2026811	0.94[CEU][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334348	0.89[CEU][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs334349	0.89[CEU][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs334350	0.85[EUR][1000 genomes]
rs334351	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs334353	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs334354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334355	0.94[CEU][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334356	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs334357	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs334358	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs334362	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs334363	0.95[ASN][1000 genomes]
rs334364	0.95[ASN][1000 genomes]
rs334365	0.81[ASN][1000 genomes]
rs334366	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs334367	0.95[ASN][1000 genomes]
rs334370	0.93[ASN][1000 genomes]
rs334371	0.80[ASN][1000 genomes]
rs367568	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3739798	1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs383496	0.83[ASN][1000 genomes]
rs385057	0.85[EUR][1000 genomes]
rs401186	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs420549	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs44466	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs597457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6478972	0.94[CEU][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6478973	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031302	0.89[CEU][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031309	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7041311	0.91[CHB][hapmap]
rs7042852	0.94[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7043624	0.84[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7874221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs789675	0.86[EUR][1000 genomes]
rs868	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868400-101881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:101868600-101889800	Weak transcription	Ovary	ovary
4	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:101868800-101875800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:101869200-101881600	Weak transcription	Fetal Intestine Small	intestine
7	chr9:101869200-101884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:101869400-101874400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:101869400-101876000	Weak transcription	Stomach Mucosa	stomach
10	chr9:101869400-101876800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:101869400-101876800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:101869600-101879400	Weak transcription	Placenta	Placenta
13	chr9:101869800-101884800	Weak transcription	A549	lung
14	chr9:101870000-101874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:101870000-101874600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:101870000-101874800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr9:101870000-101876200	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:101870000-101876400	Weak transcription	Liver	Liver
19	chr9:101870000-101879800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
21	chr9:101870200-101874400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:101870200-101874600	Weak transcription	Brain Angular Gyrus	brain
23	chr9:101870200-101874800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:101870200-101875000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:101870200-101875200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr9:101870200-101875200	Weak transcription	Right Ventricle	heart
27	chr9:101870200-101875400	Weak transcription	Hela-S3	cervix
28	chr9:101870200-101876000	Weak transcription	NH-A	brain
29	chr9:101870200-101878200	Weak transcription	Fetal Lung	lung
30	chr9:101870200-101879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:101870400-101874400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:101870400-101874800	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr9:101870400-101874800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr9:101870400-101875200	Weak transcription	Brain Substantia Nigra	brain
35	chr9:101870400-101876200	Weak transcription	Brain Anterior Caudate	brain
36	chr9:101870400-101881400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:101870600-101881200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr9:101870600-101889800	Weak transcription	NHLF	lung
39	chr9:101870800-101874400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:101870800-101874800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:101870800-101875000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr9:101870800-101878400	Weak transcription	Fetal Stomach	stomach
43	chr9:101871000-101875200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:101871000-101876600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:101871200-101874800	Weak transcription	GM12878-XiMat	blood
46	chr9:101871400-101878200	Weak transcription	Fetal Brain Male	brain
47	chr9:101872000-101875200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr9:101872000-101877000	Enhancers	Primary B cells from cord blood	blood
49	chr9:101872000-101877200	Weak transcription	HMEC	breast
50	chr9:101872200-101878200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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