Variant report

Variant	rs10733708
Chromosome Location	chr9:101868742-101868743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101866361..101869341-chr9:101886452..101890095,3	MCF-7	breast:
2	chr9:101866534..101869508-chr9:101907295..101910821,3	MCF-7	breast:
3	chr9:101608539..101611289-chr9:101866226..101869142,2	MCF-7	breast:
4	chr9:101717329..101720202-chr9:101867499..101869138,2	K562	blood:
5	chr9:101865542..101868917-chr9:101887238..101894962,8	MCF-7	breast:
6	chr15:99190239..99192114-chr9:101866946..101869163,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259424	Chromatin interaction
ENSG00000119514	Chromatin interaction
ENSG00000106799	Chromatin interaction
ENSG00000252942	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10733709	0.83[ASN][1000 genomes]
rs10739778	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10760667	0.87[ASN][1000 genomes]
rs10760668	0.85[ASN][1000 genomes]
rs10760669	0.87[ASN][1000 genomes]
rs10760670	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10760671	0.87[ASN][1000 genomes]
rs10760672	0.87[ASN][1000 genomes]
rs10760673	0.87[ASN][1000 genomes]
rs10760674	0.82[ASN][1000 genomes]
rs10819635	0.87[ASN][1000 genomes]
rs10819636	0.84[ASN][1000 genomes]
rs10819638	0.87[ASN][1000 genomes]
rs10819640	0.82[ASN][1000 genomes]
rs10988706	0.87[ASN][1000 genomes]
rs10988709	0.84[ASN][1000 genomes]
rs10988713	0.92[ASN][1000 genomes]
rs10988715	0.84[ASN][1000 genomes]
rs10988716	0.87[ASN][1000 genomes]
rs10988717	0.82[ASN][1000 genomes]
rs10988723	0.82[ASN][1000 genomes]
rs11568752	0.84[ASN][1000 genomes]
rs12685571	0.84[ASN][1000 genomes]
rs1571589	0.99[ASN][1000 genomes]
rs1590	0.96[ASN][1000 genomes]
rs1626340	0.92[ASN][1000 genomes]
rs1699413	0.84[ASN][1000 genomes]
rs1888223	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1888225	0.83[ASN][1000 genomes]
rs1973518	0.82[ASN][1000 genomes]
rs2026811	0.97[ASN][1000 genomes]
rs334348	0.96[ASN][1000 genomes]
rs334349	0.96[ASN][1000 genomes]
rs334351	0.87[ASN][1000 genomes]
rs334353	0.87[ASN][1000 genomes]
rs334354	0.87[ASN][1000 genomes]
rs334355	0.97[ASN][1000 genomes]
rs334362	0.83[ASN][1000 genomes]
rs334363	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs334364	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs334365	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs334366	0.83[ASN][1000 genomes]
rs334367	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs334370	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs334371	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs367568	0.94[ASN][1000 genomes]
rs3739798	0.83[ASN][1000 genomes]
rs383496	0.94[ASN][1000 genomes]
rs401186	0.94[ASN][1000 genomes]
rs597457	0.87[ASN][1000 genomes]
rs6478972	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6478973	0.87[ASN][1000 genomes]
rs7031302	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7031309	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7034716	0.94[EUR][1000 genomes]
rs7042852	0.82[ASN][1000 genomes]
rs7043624	0.97[ASN][1000 genomes]
rs7874221	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3327607	chr9:101866156-101869104	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv3370567	chr9:101866606-101868779	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101866000-101868800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr9:101866400-101868800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:101866400-101868800	Active TSS	Right Ventricle	heart
4	chr9:101866400-101869200	Active TSS	Aorta	Aorta
5	chr9:101866600-101868800	Active TSS	Fetal Brain Female	brain
6	chr9:101866600-101868800	Active TSS	Placenta Amnion	Placenta Amnion
7	chr9:101866600-101868800	Active TSS	Psoas Muscle	Psoas
8	chr9:101866600-101869400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr9:101866800-101868800	Active TSS	Brain Substantia Nigra	brain
10	chr9:101866800-101868800	Active TSS	Right Atrium	heart
11	chr9:101866800-101869200	Active TSS	Left Ventricle	heart
12	chr9:101866800-101869600	Active TSS	Lung	lung
13	chr9:101867000-101868800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:101867000-101868800	Active TSS	Primary T cells fromperipheralblood	blood
15	chr9:101867000-101868800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:101867000-101868800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:101867000-101868800	Active TSS	Colonic Mucosa	Colon
18	chr9:101867000-101868800	Active TSS	Fetal Intestine Large	intestine
19	chr9:101867000-101868800	Active TSS	Fetal Muscle Leg	muscle
20	chr9:101867000-101868800	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr9:101867000-101869000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:101867000-101869000	Active TSS	GM12878-XiMat	blood
23	chr9:101867000-101869400	Active TSS	Rectal Smooth Muscle	rectum
24	chr9:101867000-101869600	Active TSS	Placenta	Placenta
25	chr9:101867000-101870000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:101867000-101870000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:101867800-101868800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:101868000-101869800	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr9:101868000-101869800	Flanking Active TSS	Dnd41	blood
30	chr9:101868000-101870600	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr9:101868200-101868800	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr9:101868200-101868800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:101868200-101868800	Flanking Active TSS	Fetal Stomach	stomach
34	chr9:101868200-101868800	Flanking Active TSS	HUVEC	blood vessel
35	chr9:101868200-101869000	Flanking Bivalent TSS/Enh	Thymus	Thymus
36	chr9:101868200-101869200	Flanking Active TSS	Hela-S3	cervix
37	chr9:101868200-101870000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr9:101868200-101870200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr9:101868200-101870200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:101868200-101870200	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr9:101868200-101870600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr9:101868200-101871000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:101868200-101871200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr9:101868400-101868800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr9:101868400-101868800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
46	chr9:101868400-101868800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr9:101868400-101868800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr9:101868400-101868800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr9:101868400-101868800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr9:101868400-101868800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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