Variant report

Variant	rs334365
Chromosome Location	chr9:101929151-101929152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10733708	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10739778	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10760669	0.81[ASN][1000 genomes]
rs10760670	0.92[ASN][1000 genomes]
rs10760671	0.81[ASN][1000 genomes]
rs10760672	0.81[ASN][1000 genomes]
rs10760673	0.81[ASN][1000 genomes]
rs10819638	0.81[ASN][1000 genomes]
rs10988706	0.81[ASN][1000 genomes]
rs10988713	0.91[ASN][1000 genomes]
rs10988716	0.81[ASN][1000 genomes]
rs1571589	0.93[ASN][1000 genomes]
rs1590	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1626340	0.96[ASN][1000 genomes]
rs1699413	0.83[ASN][1000 genomes]
rs1888223	0.83[AMR][1000 genomes]
rs1973518	0.85[ASN][1000 genomes]
rs2026811	0.95[ASN][1000 genomes]
rs334348	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs334349	0.96[ASN][1000 genomes]
rs334351	0.82[ASN][1000 genomes]
rs334353	0.82[ASN][1000 genomes]
rs334354	0.81[ASN][1000 genomes]
rs334355	0.95[ASN][1000 genomes]
rs334362	0.83[ASN][1000 genomes]
rs334363	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334364	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334366	0.86[ASN][1000 genomes]
rs334367	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs334370	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs334371	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs367568	0.98[ASN][1000 genomes]
rs383496	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs401186	0.98[ASN][1000 genomes]
rs44466	0.82[ASN][1000 genomes]
rs597457	0.82[ASN][1000 genomes]
rs6478972	0.92[ASN][1000 genomes]
rs6478973	0.81[ASN][1000 genomes]
rs7031302	0.92[ASN][1000 genomes]
rs7031309	0.92[ASN][1000 genomes]
rs7043624	0.95[ASN][1000 genomes]
rs7874221	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:101914800-101929800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr9:101916000-101929600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:101922400-101930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:101922600-101930600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:101922800-101930000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:101922800-101932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:101925200-101929400	Weak transcription	K562	blood
9	chr9:101925400-101930000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:101925800-101929600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:101926400-101930800	Enhancers	GM12878-XiMat	blood
12	chr9:101927800-101930800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:101928000-101930400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:101928400-101930800	Enhancers	Primary T cells from cord blood	blood
15	chr9:101928800-101929400	Weak transcription	Thymus	Thymus
16	chr9:101928800-101930800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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