Variant report

Variant	rs334362
Chromosome Location	chr9:101926594-101926595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101920298..101922572-chr9:101925765..101928524,3	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1013186	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10283455	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10733708	0.83[ASN][1000 genomes]
rs10733709	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10739778	0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10739779	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10760667	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10760668	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10760669	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10760670	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10760671	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10760672	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10760673	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10760674	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10819634	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10819635	0.83[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10819636	0.90[ASN][1000 genomes]
rs10819637	0.85[EUR][1000 genomes]
rs10819638	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10819639	0.95[CEU][hapmap]
rs10819640	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs10988703	0.84[EUR][1000 genomes]
rs10988706	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10988709	0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs10988713	0.87[CHB][hapmap]
rs10988714	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs10988715	0.89[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs10988716	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10988717	0.92[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs10988723	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11568752	0.91[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs11568753	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs11568770	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs11568778	0.83[CHB][hapmap];0.85[ASN][1000 genomes]
rs12346650	0.86[CHB][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12685571	0.92[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs12686783	0.87[CHB][hapmap]
rs1571589	0.95[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571590	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1590	0.89[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1626340	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1699413	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1888225	0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1973518	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2026811	0.94[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334348	0.89[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs334349	0.89[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs334350	0.93[EUR][1000 genomes]
rs334351	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs334353	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs334354	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs334355	0.94[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs334356	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs334357	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs334358	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs334363	0.95[ASN][1000 genomes]
rs334364	0.95[ASN][1000 genomes]
rs334365	0.83[ASN][1000 genomes]
rs334366	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs334367	0.95[ASN][1000 genomes]
rs334370	0.93[ASN][1000 genomes]
rs334371	0.82[ASN][1000 genomes]
rs367568	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3739798	0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs383496	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs385057	0.94[EUR][1000 genomes]
rs401186	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs420549	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs44466	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs597457	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6478972	0.94[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6478973	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7022989	0.80[CHB][hapmap]
rs7031302	0.89[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7031309	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7041311	0.83[CHB][hapmap]
rs7042852	0.94[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7043624	0.84[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7874221	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs789675	0.95[EUR][1000 genomes]
rs868	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101912600-101932200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:101914800-101927600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:101914800-101929800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:101915400-101927800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:101916000-101929600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:101922400-101930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:101922600-101930600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:101922800-101930000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:101922800-101932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:101925200-101927800	Weak transcription	Gastric	stomach
11	chr9:101925200-101929400	Weak transcription	K562	blood
12	chr9:101925400-101930000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:101925600-101928400	Weak transcription	Primary T cells from cord blood	blood
14	chr9:101925800-101929600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:101926400-101930800	Enhancers	GM12878-XiMat	blood

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