Variant report

Variant	rs7022989
Chromosome Location	chr9:101933170-101933171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101932897..101935803-chr9:101935996..101937502,2	MCF-7	breast:
2	chr9:101932270..101933911-chr9:101982534..101984839,2	K562	blood:
3	chr9:101918300..101922228-chr9:101930528..101933247,3	K562	blood:
4	chr9:101932774..101936313-chr9:101937210..101940829,5	K562	blood:
5	chr9:101932557..101934266-chr9:101997104..101999753,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10114715	0.81[JPT][hapmap]
rs10739778	0.85[CHB][hapmap]
rs10760670	0.85[CHB][hapmap]
rs10819641	0.86[JPT][hapmap]
rs10988713	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10988740	0.81[JPT][hapmap]
rs10988744	0.81[YRI][hapmap]
rs10988746	0.80[YRI][hapmap]
rs12336513	0.86[JPT][hapmap]
rs12336790	0.82[JPT][hapmap];0.83[YRI][hapmap]
rs12345762	0.86[JPT][hapmap]
rs12686783	0.85[CHB][hapmap]
rs1571589	0.86[CHB][hapmap]
rs1590	0.85[CHB][hapmap]
rs16918352	0.86[JPT][hapmap];0.85[YRI][hapmap]
rs2026811	0.85[CHB][hapmap]
rs334348	0.85[CHB][hapmap]
rs334349	0.85[CHB][hapmap]
rs334355	0.85[CHB][hapmap]
rs6478972	0.85[CHB][hapmap]
rs7031302	0.90[CHB][hapmap]
rs7043624	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101929800-101933600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:101930400-101933200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:101930400-101936600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:101930800-101936000	Weak transcription	GM12878-XiMat	blood
5	chr9:101931000-101933800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:101931400-101935400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:101931400-101937000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:101931600-101933400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr9:101931600-101934200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:101931600-101934400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
12	chr9:101932200-101933200	Enhancers	Fetal Stomach	stomach
13	chr9:101932200-101933400	Enhancers	Rectal Smooth Muscle	rectum
14	chr9:101932200-101933600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:101932200-101933800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:101932200-101934400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:101932200-101935400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:101932200-101937000	Enhancers	Fetal Intestine Small	intestine
19	chr9:101932200-101940200	Enhancers	Fetal Intestine Large	intestine
20	chr9:101932400-101933200	Enhancers	Brain Germinal Matrix	brain
21	chr9:101932400-101933200	Enhancers	Fetal Brain Female	brain
22	chr9:101932400-101933800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr9:101932600-101933600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:101932800-101933200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:101932800-101933200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr9:101932800-101933800	Weak transcription	Fetal Kidney	kidney
27	chr9:101932800-101935800	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:101932800-101936600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr9:101933000-101933400	Bivalent Enhancer	HepG2	liver
30	chr9:101933000-101933600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:101933000-101934000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:101933000-101934000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr9:101933000-101935000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:101933000-101935200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:101933000-101935400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr9:101933000-101936800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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