Variant report

Variant	rs61060597
Chromosome Location	chr8:9755997-9755998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9755502..9758474-chr8:9759081..9761841,2	K562	blood:
2	chr8:9743412..9745954-chr8:9754080..9756924,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253230	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11249961	0.85[EUR][1000 genomes]
rs11783922	0.88[EUR][1000 genomes]
rs12114434	0.81[EUR][1000 genomes]
rs12114435	0.81[EUR][1000 genomes]
rs12548657	0.81[EUR][1000 genomes]
rs1567837	0.83[EUR][1000 genomes]
rs17150543	0.85[EUR][1000 genomes]
rs2048653	0.81[EUR][1000 genomes]
rs2048654	0.81[EUR][1000 genomes]
rs2409618	0.81[EUR][1000 genomes]
rs28538374	0.90[EUR][1000 genomes]
rs4840447	0.81[EUR][1000 genomes]
rs6980545	0.85[EUR][1000 genomes]
rs6984624	0.85[EUR][1000 genomes]
rs6987405	0.83[EUR][1000 genomes]
rs6988507	0.85[EUR][1000 genomes]
rs7002962	0.85[EUR][1000 genomes]
rs7006010	0.83[EUR][1000 genomes]
rs7018379	0.85[EUR][1000 genomes]
rs73662549	0.90[EUR][1000 genomes]
rs9644712	0.85[EUR][1000 genomes]
rs9657510	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9753000-9757600	Enhancers	Fetal Brain Male	brain
2	chr8:9755200-9756000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
3	chr8:9755200-9756000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
4	chr8:9755400-9756000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:9755400-9756000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr8:9755400-9756000	Flanking Active TSS	Fetal Brain Female	brain
7	chr8:9755400-9756400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:9755400-9756600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:9755400-9756800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:9755400-9757000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
11	chr8:9755600-9756000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
12	chr8:9755600-9756000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:9755600-9756000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
14	chr8:9755600-9756000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr8:9755600-9756200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:9755600-9756400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr8:9755600-9756800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
18	chr8:9755600-9757000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr8:9755600-9757000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr8:9755800-9756000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:9755800-9756000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr8:9755800-9756000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:9755800-9756000	Bivalent Enhancer	Psoas Muscle	Psoas
24	chr8:9755800-9756000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
25	chr8:9755800-9756200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
26	chr8:9755800-9756400	Active TSS	H9 Cell Line	embryonic stem cell
27	chr8:9755800-9756400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr8:9755800-9756400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr8:9755800-9756400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr8:9755800-9756400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:9755800-9756600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
32	chr8:9755800-9756800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:9755800-9757000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr8:9755800-9757000	Bivalent Enhancer	Fetal Stomach	stomach
35	chr8:9755800-9757200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
36	chr8:9755800-9757200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
37	chr8:9755800-9757200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:9755800-9757200	Enhancers	Spleen	Spleen
39	chr8:9755800-9757400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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