Variant report

Variant	rs6106908
Chromosome Location	chr20:24541992-24541993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs36109627	1.00[ASN][1000 genomes]
rs59567755	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106909	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61205485	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73905112	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73905113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73905114	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8119329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24528800-24546400	Weak transcription	Aorta	Aorta
2	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24541000-24542200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:24541000-24542400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:24541000-24543200	Enhancers	Brain Substantia Nigra	brain
6	chr20:24541200-24542400	Enhancers	Brain Cingulate Gyrus	brain
7	chr20:24541600-24542200	Enhancers	Brain Angular Gyrus	brain
8	chr20:24541600-24542600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr20:24541600-24542600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr20:24541800-24542000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:24541800-24542000	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr20:24541800-24542000	Enhancers	Psoas Muscle	Psoas
13	chr20:24541800-24542000	Enhancers	Right Atrium	heart
14	chr20:24541800-24542200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr20:24541800-24542200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr20:24541800-24542400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr20:24541800-24542400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:24541800-24542400	Enhancers	Left Ventricle	heart
19	chr20:24541800-24551600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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