Variant report

Variant	rs61082937
Chromosome Location	chr12:12570100-12570101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11834653	1.00[AMR][1000 genomes]
rs11835141	1.00[AMR][1000 genomes]
rs11835684	1.00[AMR][1000 genomes]
rs59272770	1.00[AMR][1000 genomes]
rs59783239	1.00[EUR][1000 genomes]
rs60014612	1.00[AMR][1000 genomes]
rs60117219	1.00[AMR][1000 genomes]
rs60402543	1.00[AMR][1000 genomes]
rs61445660	1.00[EUR][1000 genomes]
rs73277470	1.00[EUR][1000 genomes]
rs73277472	1.00[EUR][1000 genomes]
rs73277493	1.00[EUR][1000 genomes]
rs74061144	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1812889	chr12:12510842-12593406	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12537200-12576000	Weak transcription	Primary B cells from cord blood	blood
2	chr12:12557200-12572400	Weak transcription	Primary T cells from cord blood	blood
3	chr12:12558000-12586000	Weak transcription	Pancreas	Pancrea
4	chr12:12562400-12576200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:12565200-12585000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr12:12568600-12570200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:12568800-12570200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:12568800-12570400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:12569000-12576800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr12:12569800-12570400	Enhancers	A549	lung
11	chr12:12569800-12570600	Enhancers	HepG2	liver
12	chr12:12570000-12570200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr12:12570000-12570400	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links