Variant report

Variant	rs73277472
Chromosome Location	chr12:12485031-12485032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:12479198..12480920-chr12:12483064..12485250,2	K562	blood:
2	chr12:12479190..12481721-chr12:12482518..12485352,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59783239	1.00[EUR][1000 genomes]
rs61082937	1.00[EUR][1000 genomes]
rs61445660	1.00[EUR][1000 genomes]
rs7139259	1.00[EUR][1000 genomes]
rs73277470	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73277481	0.86[AFR][1000 genomes]
rs73277493	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73279312	0.86[AFR][1000 genomes]
rs74061119	1.00[EUR][1000 genomes]
rs74061139	1.00[EUR][1000 genomes]
rs74061144	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898807	chr12:12448948-12502001	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898808	chr12:12463407-12549503	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12473200-12485200	Weak transcription	HSMMtube	muscle
2	chr12:12473200-12501600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:12473600-12485200	Weak transcription	NH-A	brain
4	chr12:12473600-12493200	Weak transcription	Fetal Brain Female	brain
5	chr12:12473600-12502000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:12473800-12486200	Weak transcription	Colonic Mucosa	Colon
7	chr12:12473800-12487600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:12473800-12491800	Weak transcription	Left Ventricle	heart
9	chr12:12473800-12502400	Weak transcription	NHLF	lung
10	chr12:12474000-12489200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:12474200-12486600	Weak transcription	Brain Substantia Nigra	brain
12	chr12:12476000-12486400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:12477000-12487600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr12:12477200-12486200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:12477200-12491800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:12480400-12487400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr12:12480400-12490800	Weak transcription	Right Atrium	heart
18	chr12:12480400-12502400	Weak transcription	Right Ventricle	heart
19	chr12:12480800-12486400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr12:12480800-12486600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr12:12481000-12486200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:12481000-12486400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr12:12481000-12486400	Weak transcription	Primary T cells from cord blood	blood
24	chr12:12481000-12486400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr12:12481000-12486400	Weak transcription	Dnd41	blood
26	chr12:12481000-12486400	Weak transcription	GM12878-XiMat	blood
27	chr12:12481000-12486600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:12481000-12487400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr12:12481200-12486400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr12:12481200-12486400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr12:12481200-12486600	Weak transcription	HepG2	liver
32	chr12:12481200-12487400	Weak transcription	A549	lung
33	chr12:12481200-12491000	Weak transcription	Hela-S3	cervix
34	chr12:12481200-12495400	Weak transcription	Colon Smooth Muscle	Colon
35	chr12:12481200-12502200	Weak transcription	Fetal Heart	heart
36	chr12:12481800-12486200	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr12:12481800-12502400	Weak transcription	Psoas Muscle	Psoas
38	chr12:12482400-12502200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:12483400-12485200	Weak transcription	Fetal Thymus	thymus
40	chr12:12483400-12485400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr12:12483600-12486200	Weak transcription	Brain Hippocampus Middle	brain
42	chr12:12483600-12486200	Weak transcription	Fetal Stomach	stomach
43	chr12:12483600-12486400	Weak transcription	Aorta	Aorta
44	chr12:12483600-12486400	Weak transcription	Ovary	ovary
45	chr12:12483600-12487400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr12:12483600-12487400	Weak transcription	Adipose Nuclei	Adipose
47	chr12:12483600-12487600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr12:12483600-12487600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr12:12483600-12488400	Enhancers	Stomach Mucosa	stomach
50	chr12:12483600-12502800	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links