Variant report

Variant	rs61083756
Chromosome Location	chr11:72445059-72445060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72443164..72445322-chr11:72509462..72511840,2	MCF-7	breast:
2	chr11:72444083..72446802-chr11:72523865..72527910,3	MCF-7	breast:
3	chr11:72442442..72445140-chr11:72489342..72493010,3	MCF-7	breast:
4	chr11:72441893..72446112-chr11:72446324..72449396,4	K562	blood:
5	chr11:72443116..72445860-chr11:72521968..72526626,4	MCF-7	breast:
6	chr11:72444412..72447867-chr11:72449719..72452894,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214530	Chromatin interaction
ENSG00000168010	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12287469	1.00[EUR][1000 genomes]
rs12419767	1.00[EUR][1000 genomes]
rs519201	1.00[EUR][1000 genomes]
rs55816648	1.00[EUR][1000 genomes]
rs56251316	1.00[EUR][1000 genomes]
rs57712040	1.00[EUR][1000 genomes]
rs58196942	0.80[AFR][1000 genomes]
rs58756839	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59308438	0.80[AFR][1000 genomes]
rs59700555	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60057195	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs615703	1.00[EUR][1000 genomes]
rs61661445	1.00[EUR][1000 genomes]
rs73543236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72433600-72446000	Genic enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:72433600-72447800	Weak transcription	Aorta	Aorta
3	chr11:72433600-72452400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:72434000-72446600	Weak transcription	NH-A	brain
5	chr11:72434000-72446800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:72434000-72452200	Weak transcription	Small Intestine	intestine
7	chr11:72434200-72446200	Weak transcription	Left Ventricle	heart
8	chr11:72434200-72446800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:72434200-72447600	Weak transcription	Right Ventricle	heart
10	chr11:72434200-72448200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:72434600-72447600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:72435000-72446800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:72435600-72446800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:72435600-72449600	Weak transcription	Pancreas	Pancrea
15	chr11:72436200-72446600	Weak transcription	NHLF	lung
16	chr11:72436600-72447400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:72436800-72445400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:72436800-72445600	Genic enhancers	Monocytes-CD14+_RO01746	blood
19	chr11:72436800-72446600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:72436800-72446600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:72436800-72446600	Weak transcription	Adipose Nuclei	Adipose
22	chr11:72436800-72446800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:72436800-72447000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:72437000-72445200	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:72437000-72445400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:72437000-72446600	Weak transcription	Placenta	Placenta
27	chr11:72437000-72447000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:72437400-72446800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:72437400-72447400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:72437600-72446400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:72437600-72446400	Weak transcription	Hela-S3	cervix
32	chr11:72437800-72446800	Weak transcription	Gastric	stomach
33	chr11:72437800-72449000	Weak transcription	Colonic Mucosa	Colon
34	chr11:72438000-72447800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:72438200-72446400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:72438400-72446800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:72438600-72448000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:72438800-72445600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:72438800-72446400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:72438800-72446600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:72438800-72447400	Weak transcription	Esophagus	oesophagus
42	chr11:72439000-72446000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:72439000-72446800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:72439000-72446800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:72439000-72446800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:72439000-72446800	Weak transcription	Right Atrium	heart
47	chr11:72439200-72445600	Weak transcription	NHDF-Ad	bronchial
48	chr11:72442000-72446600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:72442000-72446600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:72442000-72446600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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