Variant report

Variant	rs61661445
Chromosome Location	chr11:72432913-72432914
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72430803..72433012-chr11:72434377..72436437,3	MCF-7	breast:
2	chr11:72432212..72438079-chr11:72503579..72507160,8	MCF-7	breast:
3	chr11:72432071..72434614-chr11:72523637..72525908,4	K562	blood:
4	chr11:72431813..72439722-chr11:72491472..72498611,14	MCF-7	breast:
5	chr11:72419217..72421589-chr11:72432521..72435426,2	K562	blood:
6	chr11:72431679..72434346-chr11:72525248..72526787,2	MCF-7	breast:
7	chr11:72422674..72429269-chr11:72431829..72438308,7	K562	blood:
8	chr11:72431813..72433546-chr11:72525134..72527410,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000214530	Chromatin interaction
ENSG00000244134	Chromatin interaction
ENSG00000168010	Chromatin interaction
ENSG00000265064	Chromatin interaction
ENSG00000186635	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12287469	1.00[EUR][1000 genomes]
rs12419767	1.00[EUR][1000 genomes]
rs519201	1.00[EUR][1000 genomes]
rs55816648	1.00[EUR][1000 genomes]
rs56251316	1.00[EUR][1000 genomes]
rs57712040	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58196942	0.89[AFR][1000 genomes]
rs58756839	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59308438	0.89[AFR][1000 genomes]
rs59700555	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60057195	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61083756	1.00[EUR][1000 genomes]
rs615703	1.00[EUR][1000 genomes]
rs73543236	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv555408	chr11:72405223-72441431	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72418000-72434800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:72418000-72441000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:72419000-72433200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:72422400-72433200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:72424200-72433000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:72424600-72441200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:72429800-72433200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr11:72429800-72434000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr11:72430200-72434000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:72430400-72433200	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr11:72430400-72434000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:72430800-72433800	Flanking Active TSS	Fetal Muscle Leg	muscle
13	chr11:72430800-72434000	Flanking Active TSS	HMEC	breast
14	chr11:72430800-72434600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:72430800-72434800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:72431000-72433000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr11:72431000-72433400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr11:72431000-72433800	Flanking Active TSS	Fetal Muscle Trunk	muscle
19	chr11:72431000-72434000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:72431000-72434000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:72431000-72434200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr11:72431200-72433000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr11:72431200-72433000	Weak transcription	Hela-S3	cervix
24	chr11:72431200-72433200	Flanking Active TSS	HUVEC	blood vessel
25	chr11:72431200-72433600	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr11:72431200-72434200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:72431400-72433200	Transcr. at gene 5' and 3'	Dnd41	blood
28	chr11:72431400-72433400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:72431400-72433600	Flanking Active TSS	Placenta	Placenta
30	chr11:72431400-72433800	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr11:72431400-72433800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:72431400-72434000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:72431600-72433000	Flanking Active TSS	Brain Germinal Matrix	brain
34	chr11:72431600-72433000	Flanking Active TSS	Fetal Thymus	thymus
35	chr11:72431600-72433600	Flanking Active TSS	Fetal Heart	heart
36	chr11:72431600-72434000	Flanking Active TSS	Brain Angular Gyrus	brain
37	chr11:72431600-72434000	Flanking Active TSS	Osteobl	bone
38	chr11:72431800-72433000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:72431800-72433000	Flanking Active TSS	Fetal Lung	lung
40	chr11:72431800-72433800	Flanking Active TSS	NHLF	lung
41	chr11:72431800-72434000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:72432000-72433000	Active TSS	Brain Cingulate Gyrus	brain
43	chr11:72432000-72433000	Active TSS	Fetal Kidney	kidney
44	chr11:72432000-72433200	Active TSS	Brain Substantia Nigra	brain
45	chr11:72432000-72433600	Active TSS	Aorta	Aorta
46	chr11:72432000-72433600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:72432000-72433800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:72432000-72433800	Flanking Active TSS	Fetal Brain Female	brain
49	chr11:72432000-72434000	Active TSS	Gastric	stomach
50	chr11:72432200-72433400	Flanking Active TSS	NHEK	skin

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