Variant report

Variant	rs61095445
Chromosome Location	chr5:60706309-60706310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:60704554..60708458-chr5:60711463..60715174,4	MCF-7	breast:
2	chr5:60456910..60459732-chr5:60703515..60707130,5	MCF-7	breast:
3	chr5:60626312..60629944-chr5:60702524..60707105,7	MCF-7	breast:
4	chr5:60703951..60706510-chr5:60708254..60709801,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130449	Chromatin interaction
ENSG00000188725	Chromatin interaction
ENSG00000251279	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16890807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891566	0.95[AFR][1000 genomes]
rs16891744	0.95[AFR][1000 genomes]
rs16891780	0.89[AFR][1000 genomes]
rs56805935	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73105381	1.00[AMR][1000 genomes]
rs73107440	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73107453	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60682000-60709800	Weak transcription	Left Ventricle	heart
2	chr5:60682600-60712400	Weak transcription	Esophagus	oesophagus
3	chr5:60687600-60711800	Weak transcription	Aorta	Aorta
4	chr5:60690800-60706800	Weak transcription	Gastric	stomach
5	chr5:60698000-60725400	Weak transcription	Spleen	Spleen
6	chr5:60699400-60706800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:60703600-60708800	Enhancers	Brain Substantia Nigra	brain
8	chr5:60704800-60706800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:60704800-60708400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:60704800-60709800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:60704800-60709800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:60704800-60709800	Weak transcription	Pancreas	Pancrea
13	chr5:60705000-60707800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:60705000-60708200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:60705200-60707200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:60705200-60708000	Weak transcription	Ovary	ovary
17	chr5:60705200-60708200	Enhancers	Brain Anterior Caudate	brain
18	chr5:60705200-60708600	Enhancers	Brain Hippocampus Middle	brain
19	chr5:60705200-60727200	Weak transcription	Fetal Stomach	stomach
20	chr5:60705400-60706400	Enhancers	Primary hematopoietic stem cells	blood
21	chr5:60705400-60707200	Enhancers	NH-A	brain
22	chr5:60705400-60708000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:60705400-60708400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:60705400-60708400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr5:60705400-60713400	Weak transcription	Brain Germinal Matrix	brain
26	chr5:60705400-60713600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:60705600-60706800	Weak transcription	Fetal Lung	lung
28	chr5:60705600-60712200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:60705600-60719000	Weak transcription	Fetal Brain Male	brain
30	chr5:60705800-60706400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:60705800-60706800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:60705800-60707000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:60705800-60707400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:60705800-60707400	Weak transcription	Fetal Brain Female	brain
35	chr5:60705800-60707600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr5:60705800-60708400	Enhancers	Brain Cingulate Gyrus	brain
37	chr5:60705800-60708600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr5:60705800-60709800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr5:60705800-60709800	Weak transcription	Liver	Liver
40	chr5:60705800-60710400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr5:60705800-60711400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr5:60706000-60706400	Enhancers	HSMMtube	muscle
43	chr5:60706000-60706400	Enhancers	Osteobl	bone
44	chr5:60706000-60706600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:60706000-60707000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr5:60706000-60707000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:60706000-60707000	Enhancers	Muscle Satellite Cultured Cells	--
48	chr5:60706000-60707400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr5:60706000-60707400	Weak transcription	Colon Smooth Muscle	Colon
50	chr5:60706000-60707800	Weak transcription	Brain Angular Gyrus	brain

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