Variant report

Variant	rs73107440
Chromosome Location	chr5:60727288-60727289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16890807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891566	0.92[AFR][1000 genomes]
rs16891744	0.92[AFR][1000 genomes]
rs16891780	0.98[AFR][1000 genomes]
rs56805935	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61095445	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876005	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73105381	1.00[AMR][1000 genomes]
rs73107453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60706000-60728000	Weak transcription	Fetal Intestine Small	intestine
2	chr5:60706200-60727800	Weak transcription	HUVEC	blood vessel
3	chr5:60711000-60735800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:60712600-60727600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:60713400-60732800	Weak transcription	Small Intestine	intestine
6	chr5:60714000-60727800	Weak transcription	Brain Germinal Matrix	brain
7	chr5:60719200-60729400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:60719800-60745200	Weak transcription	NHDF-Ad	bronchial
9	chr5:60720000-60727800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:60720000-60733800	Weak transcription	NHLF	lung
11	chr5:60720000-60736400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:60720000-60737400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:60720400-60728200	Weak transcription	Fetal Muscle Leg	muscle
14	chr5:60720400-60734000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:60720600-60743200	Weak transcription	HSMMtube	muscle
16	chr5:60721000-60733000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:60721400-60727800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:60721600-60728000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:60721800-60728200	Weak transcription	Right Ventricle	heart
20	chr5:60723000-60727800	Weak transcription	HSMM	muscle
21	chr5:60725400-60727800	Weak transcription	Colon Smooth Muscle	Colon
22	chr5:60725600-60727800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:60725600-60727800	Weak transcription	Fetal Brain Male	brain
24	chr5:60725600-60728000	Enhancers	Brain Substantia Nigra	brain
25	chr5:60725600-60728000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr5:60725600-60732600	Weak transcription	Fetal Heart	heart
27	chr5:60725600-60737400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:60725800-60727600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:60725800-60727600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:60725800-60727800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:60725800-60727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:60725800-60727800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr5:60725800-60727800	Weak transcription	Fetal Lung	lung
34	chr5:60725800-60727800	Weak transcription	Ovary	ovary
35	chr5:60725800-60728000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr5:60725800-60728000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:60725800-60732800	Weak transcription	Esophagus	oesophagus
38	chr5:60725800-60732800	Weak transcription	Pancreas	Pancrea
39	chr5:60726000-60727600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr5:60726000-60727800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:60726000-60727800	Weak transcription	Fetal Kidney	kidney
42	chr5:60726000-60728000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:60726000-60728000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr5:60726000-60728000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:60726000-60728000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr5:60726000-60729200	Weak transcription	Gastric	stomach
47	chr5:60726000-60730800	Weak transcription	Fetal Brain Female	brain
48	chr5:60726000-60732800	Weak transcription	Left Ventricle	heart
49	chr5:60726000-60732800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr5:60726000-60733800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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