Variant report

Variant	rs61104202
Chromosome Location	chr13:52189368-52189369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73494104	0.91[AFR][1000 genomes]
rs73494106	0.91[AFR][1000 genomes]
rs73494108	0.82[AFR][1000 genomes]
rs73494135	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52168400-52194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:52173600-52190400	Weak transcription	Fetal Heart	heart
3	chr13:52180600-52192000	Weak transcription	A549	lung
4	chr13:52182200-52194400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:52182400-52191600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:52184400-52194400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:52186800-52193000	Weak transcription	HepG2	liver
8	chr13:52187400-52192400	Weak transcription	HMEC	breast
9	chr13:52187400-52194000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:52187600-52190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:52187600-52192200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:52187600-52192400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:52187800-52191600	Weak transcription	Osteobl	bone
14	chr13:52188400-52189400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr13:52188800-52190600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:52188800-52192200	Weak transcription	NHEK	skin
17	chr13:52188800-52192400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:52188800-52192400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr13:52188800-52192800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:52188800-52192800	Weak transcription	Fetal Brain Female	brain
21	chr13:52188800-52192800	Weak transcription	Right Atrium	heart
22	chr13:52188800-52192800	Weak transcription	Right Ventricle	heart
23	chr13:52188800-52193000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:52188800-52193000	Weak transcription	Esophagus	oesophagus
25	chr13:52188800-52193800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr13:52188800-52194000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr13:52188800-52194400	Weak transcription	Fetal Brain Male	brain
28	chr13:52188800-52195800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr13:52188800-52197000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr13:52188800-52199200	Weak transcription	Liver	Liver
31	chr13:52189000-52189400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr13:52189000-52189400	Active TSS	GM12878-XiMat	blood
33	chr13:52189000-52190000	Weak transcription	Pancreas	Pancrea
34	chr13:52189000-52190200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr13:52189000-52190600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr13:52189000-52191400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr13:52189000-52191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr13:52189000-52191400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr13:52189000-52191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr13:52189000-52191600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr13:52189000-52191600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr13:52189000-52191600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr13:52189000-52191600	Weak transcription	Ovary	ovary
44	chr13:52189000-52192000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:52189000-52192200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr13:52189000-52192200	Weak transcription	Brain Angular Gyrus	brain
47	chr13:52189000-52192200	Weak transcription	Brain Germinal Matrix	brain
48	chr13:52189000-52192400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr13:52189000-52192400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr13:52189000-52192400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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