Variant report

Variant	rs73494104
Chromosome Location	chr13:52135377-52135378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs61104202	0.91[AFR][1000 genomes]
rs73492296	0.84[AFR][1000 genomes]
rs73492298	0.84[AFR][1000 genomes]
rs73494106	1.00[AFR][1000 genomes]
rs73494108	0.91[AFR][1000 genomes]
rs73494135	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52131000-52138800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:52132600-52135800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:52133200-52136200	Weak transcription	HSMMtube	muscle
4	chr13:52133400-52138800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:52133600-52137800	Weak transcription	Hela-S3	cervix
6	chr13:52134000-52135400	Enhancers	Primary hematopoietic stem cells	blood
7	chr13:52134000-52135600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr13:52134000-52135600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:52134000-52136800	Enhancers	Primary B cells from cord blood	blood
10	chr13:52134000-52136800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr13:52134000-52137000	Enhancers	Primary B cells from peripheral blood	blood
12	chr13:52134000-52137000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:52134200-52137000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr13:52134600-52136000	Enhancers	GM12878-XiMat	blood
15	chr13:52134800-52136000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:52135200-52136400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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