Variant report

Variant	rs73492296
Chromosome Location	chr13:52116240-52116241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:52114829..52118630-chr13:52158674..52160777,3	MCF-7	breast:
2	chr13:52024743..52028940-chr13:52112359..52118516,11	MCF-7	breast:
3	chr13:52025591..52028718-chr13:52111998..52119680,9	MCF-7	breast:
4	chr13:52025248..52027565-chr13:52113097..52117557,5	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDFY2-2	chr13:52116061-52116321	ENSG00000236778.3
2	lnc-WDFY2-2	chr13:52115694-52116320	ENSG00000236778.3
3	lnc-WDFY2-2	chr13:52115694-52116320	ENSG00000236778.3

No data

Variant related genes	Relation type
ENSG00000206920	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73492298	0.84[AFR][1000 genomes]
rs73494104	0.84[AFR][1000 genomes]
rs73494106	0.84[AFR][1000 genomes]
rs73494108	0.91[AFR][1000 genomes]
rs73494135	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52107200-52116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:52109000-52116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:52113000-52116400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:52113000-52117600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:52113200-52116600	Enhancers	Colon Smooth Muscle	Colon
6	chr13:52113200-52116800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:52113200-52116800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:52113200-52117400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:52113400-52116400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:52113400-52116600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:52113800-52117200	Enhancers	NHDF-Ad	bronchial
12	chr13:52114000-52117000	Enhancers	Adipose Nuclei	Adipose
13	chr13:52114000-52117200	Enhancers	Rectal Smooth Muscle	rectum
14	chr13:52114000-52117200	Enhancers	NHLF	lung
15	chr13:52114400-52117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:52114400-52122800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr13:52114600-52117400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:52114800-52117400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr13:52115200-52116600	Enhancers	HepG2	liver
20	chr13:52115200-52117200	Enhancers	K562	blood
21	chr13:52115200-52117800	Enhancers	Fetal Stomach	stomach
22	chr13:52115400-52117000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:52115800-52116600	Flanking Active TSS	A549	lung
24	chr13:52115800-52117200	Enhancers	Stomach Mucosa	stomach
25	chr13:52115800-52117400	Enhancers	Fetal Lung	lung
26	chr13:52116000-52116400	Enhancers	Brain Hippocampus Middle	brain
27	chr13:52116000-52116400	Enhancers	Fetal Kidney	kidney
28	chr13:52116000-52116600	Enhancers	Brain Angular Gyrus	brain
29	chr13:52116000-52116600	Enhancers	Brain Anterior Caudate	brain
30	chr13:52116000-52116800	Enhancers	Left Ventricle	heart
31	chr13:52116000-52116800	Enhancers	Ovary	ovary
32	chr13:52116000-52116800	Enhancers	Pancreas	Pancrea
33	chr13:52116000-52116800	Enhancers	Hela-S3	cervix
34	chr13:52116000-52117200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr13:52116000-52117200	Enhancers	Fetal Heart	heart
36	chr13:52116000-52117200	Flanking Active TSS	NHEK	skin
37	chr13:52116000-52117400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:52116000-52117600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:52116000-52117600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr13:52116000-52117800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr13:52116200-52116400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:52116200-52116600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr13:52116200-52116600	Enhancers	Brain Cingulate Gyrus	brain
44	chr13:52116200-52116600	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr13:52116200-52117000	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr13:52116200-52117000	Enhancers	HSMM	muscle
47	chr13:52116200-52117200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr13:52116200-52117200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr13:52116200-52117200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr13:52116200-52117200	Enhancers	Right Atrium	heart

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