Variant report

Variant	rs73492298
Chromosome Location	chr13:52117337-52117338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52114829..52118630-chr13:52158674..52160777,3	MCF-7	breast:
2	chr13:52097892..52100856-chr13:52116371..52118761,2	MCF-7	breast:
3	chr13:52024743..52028940-chr13:52112359..52118516,11	MCF-7	breast:
4	chr13:52025591..52028718-chr13:52111998..52119680,9	MCF-7	breast:
5	chr13:52025248..52027565-chr13:52113097..52117557,5	K562	blood:

Variant related genes	Relation type
ENSG00000206920	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73492296	0.84[AFR][1000 genomes]
rs73494104	0.84[AFR][1000 genomes]
rs73494106	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52113000-52117600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:52113200-52117400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:52114400-52122800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr13:52114600-52117400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:52114800-52117400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr13:52115200-52117800	Enhancers	Fetal Stomach	stomach
7	chr13:52115800-52117400	Enhancers	Fetal Lung	lung
8	chr13:52116000-52117400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:52116000-52117600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:52116000-52117600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:52116000-52117800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:52116200-52117400	Enhancers	Brain Substantia Nigra	brain
13	chr13:52116600-52117400	Active TSS	A549	lung
14	chr13:52116800-52117400	Enhancers	Fetal Kidney	kidney
15	chr13:52116800-52123000	Weak transcription	Hela-S3	cervix
16	chr13:52116800-52132000	Weak transcription	Pancreas	Pancrea
17	chr13:52117000-52117400	Enhancers	Colon Smooth Muscle	Colon
18	chr13:52117000-52117400	Active TSS	Ovary	ovary
19	chr13:52117000-52117600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr13:52117000-52126200	Weak transcription	Adipose Nuclei	Adipose
21	chr13:52117200-52117400	Enhancers	HepG2	liver
22	chr13:52117200-52122600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr13:52117200-52122800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr13:52117200-52122800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr13:52117200-52122800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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