Variant report

Variant	rs6110698
Chromosome Location	chr20:15619545-15619546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6079912	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6079923	1.00[ASN][1000 genomes]
rs6110699	1.00[ASN][1000 genomes]
rs74179781	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15616800-15619800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr20:15617000-15619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:15617000-15619800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr20:15617000-15619800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:15617000-15620400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:15617200-15619800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:15617200-15619800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:15617600-15629000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr20:15618000-15619800	Enhancers	Fetal Heart	heart
10	chr20:15618200-15619600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr20:15618400-15620000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:15618400-15620400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr20:15618600-15619800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr20:15618600-15619800	Enhancers	Fetal Stomach	stomach
15	chr20:15618800-15622600	Weak transcription	Aorta	Aorta
16	chr20:15619000-15619600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr20:15619000-15620200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr20:15619000-15622000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr20:15619000-15622400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr20:15619000-15622600	Weak transcription	Brain Substantia Nigra	brain
21	chr20:15619400-15619600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr20:15619400-15622800	Weak transcription	Fetal Kidney	kidney
23	chr20:15619400-15629200	Weak transcription	Colon Smooth Muscle	Colon
24	chr20:15619400-15634600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links