Variant report

Variant	rs74179781
Chromosome Location	chr20:15618860-15618861
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6079912	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6079923	1.00[ASN][1000 genomes]
rs6110698	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6110699	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15616600-15619200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr20:15616800-15619400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr20:15616800-15619800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr20:15617000-15619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr20:15617000-15619800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:15617000-15619800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr20:15617000-15620400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:15617200-15619800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:15617200-15619800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:15617400-15619200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr20:15617600-15619200	Enhancers	Fetal Lung	lung
12	chr20:15617600-15629000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr20:15617800-15619000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr20:15618000-15619000	Enhancers	Brain Cingulate Gyrus	brain
15	chr20:15618000-15619000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr20:15618000-15619000	Enhancers	Stomach Smooth Muscle	stomach
17	chr20:15618000-15619400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr20:15618000-15619400	Enhancers	Colon Smooth Muscle	Colon
19	chr20:15618000-15619800	Enhancers	Fetal Heart	heart
20	chr20:15618200-15619000	Enhancers	Liver	Liver
21	chr20:15618200-15619000	Enhancers	Pancreas	Pancrea
22	chr20:15618200-15619200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr20:15618200-15619200	Enhancers	Brain Anterior Caudate	brain
24	chr20:15618200-15619200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr20:15618200-15619400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr20:15618200-15619400	Enhancers	Fetal Kidney	kidney
27	chr20:15618200-15619600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr20:15618400-15619400	Enhancers	Rectal Smooth Muscle	rectum
29	chr20:15618400-15620000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr20:15618400-15620400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr20:15618600-15619000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr20:15618600-15619000	Enhancers	Brain Substantia Nigra	brain
33	chr20:15618600-15619800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr20:15618600-15619800	Enhancers	Fetal Stomach	stomach
35	chr20:15618800-15619000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr20:15618800-15619000	Enhancers	Brain Germinal Matrix	brain
37	chr20:15618800-15622600	Weak transcription	Aorta	Aorta

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