Variant report

Variant	rs61110849
Chromosome Location	chr9:93847534-93847535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57600468	1.00[AMR][1000 genomes]
rs58032709	1.00[AMR][1000 genomes]
rs59303656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59709096	1.00[AMR][1000 genomes]
rs60907447	0.92[AFR][1000 genomes]
rs61430778	0.92[AFR][1000 genomes]
rs7047039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73650294	1.00[AMR][1000 genomes]
rs73650912	0.92[AFR][1000 genomes]
rs73650913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73650915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73650916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73650920	1.00[AMR][1000 genomes]
rs73653528	1.00[AMR][1000 genomes]
rs7854315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7855470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93841000-93847800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:93841200-93847800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:93841600-93849600	Weak transcription	Fetal Intestine Small	intestine
4	chr9:93843000-93849000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:93846600-93847800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:93846600-93850200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:93846800-93847600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:93846800-93847600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:93846800-93847800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:93847200-93847600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:93847200-93847600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr9:93847200-93847800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:93847200-93848200	Enhancers	HepG2	liver
14	chr9:93847400-93847800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:93847400-93848000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:93847400-93848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:93847400-93848600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:93847400-93849600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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