Variant report

Variant	rs73650920
Chromosome Location	chr9:93863400-93863401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93861383..93864130-chr9:93924341..93926643,2	K562	blood:
2	chr9:93856837..93858612-chr9:93863193..93865232,2	MCF-7	breast:
3	chr9:93860852..93862614-chr9:93863253..93866000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237422	Chromatin interaction
ENSG00000235641	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57600468	1.00[AMR][1000 genomes]
rs58032709	1.00[AMR][1000 genomes]
rs59303656	1.00[AMR][1000 genomes]
rs59709096	1.00[AMR][1000 genomes]
rs61110849	1.00[AMR][1000 genomes]
rs7030177	1.00[AFR][1000 genomes]
rs7047039	1.00[AMR][1000 genomes]
rs73650294	1.00[AMR][1000 genomes]
rs73650913	1.00[AMR][1000 genomes]
rs73650915	1.00[AMR][1000 genomes]
rs73650916	1.00[AMR][1000 genomes]
rs73653528	1.00[AMR][1000 genomes]
rs7854315	1.00[AMR][1000 genomes]
rs7855470	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93859800-93865200	Enhancers	Fetal Heart	heart
2	chr9:93860400-93863400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr9:93860600-93864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:93860600-93864200	Enhancers	Brain Germinal Matrix	brain
5	chr9:93860600-93865000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:93860600-93865000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:93860800-93864000	Enhancers	Primary hematopoietic stem cells	blood
8	chr9:93861000-93864800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:93861200-93864200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:93861200-93864800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:93861200-93864800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:93861200-93865000	Enhancers	NHLF	lung
13	chr9:93861400-93865000	Enhancers	HepG2	liver
14	chr9:93861400-93865200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:93861600-93863400	Enhancers	Fetal Intestine Small	intestine
16	chr9:93861600-93863600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr9:93861600-93864000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:93861600-93864000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr9:93861600-93864000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr9:93861600-93864800	Enhancers	NHDF-Ad	bronchial
21	chr9:93861600-93865000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr9:93861600-93865000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr9:93861600-93865000	Enhancers	Fetal Thymus	thymus
24	chr9:93861600-93865800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr9:93861800-93863400	Enhancers	Stomach Mucosa	stomach
26	chr9:93861800-93863600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:93861800-93863600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:93861800-93863600	Enhancers	Fetal Stomach	stomach
29	chr9:93861800-93863600	Enhancers	HMEC	breast
30	chr9:93861800-93863600	Enhancers	Osteobl	bone
31	chr9:93861800-93863800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:93861800-93863800	Enhancers	Fetal Intestine Large	intestine
33	chr9:93861800-93864200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:93861800-93864400	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr9:93861800-93864400	Enhancers	Fetal Brain Female	brain
36	chr9:93861800-93864600	Enhancers	Duodenum Mucosa	Duodenum
37	chr9:93861800-93864800	Enhancers	Primary B cells from peripheral blood	blood
38	chr9:93861800-93864800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:93861800-93865000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr9:93861800-93865200	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr9:93862000-93864000	Enhancers	Liver	Liver
42	chr9:93862000-93864000	Enhancers	Thymus	Thymus
43	chr9:93862000-93864400	Enhancers	GM12878-XiMat	blood
44	chr9:93862000-93865000	Enhancers	Primary T cells from cord blood	blood
45	chr9:93862200-93864000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr9:93862200-93865000	Enhancers	Primary T cells fromperipheralblood	blood
47	chr9:93862400-93864200	Enhancers	Adipose Nuclei	Adipose
48	chr9:93862600-93863400	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr9:93862600-93863400	Enhancers	HSMM	muscle
50	chr9:93862600-93863400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links