Variant report

Variant	rs7030177
Chromosome Location	chr9:93880653-93880654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:93880447-93880719	Hela-S3	cervix:	n/a	n/a
2	E2F6	chr9:93880391-93880801	K562	blood:	n/a	chr9:93880578-93880587
3	MAX	chr9:93880179-93880845	H1-hESC	embryonic stem cell:	n/a	chr9:93880603-93880612 chr9:93880421-93880431 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
4	E2F6	chr9:93879882-93881028	H1-hESC	embryonic stem cell:	n/a	chr9:93880578-93880587
5	MAX	chr9:93880440-93880792	K562	blood:	n/a	chr9:93880603-93880612 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
6	SMARCC1	chr9:93880314-93882384	Hela-S3	cervix:	n/a	chr9:93882054-93882063
7	BHLHE40	chr9:93880408-93880759	K562	blood:	n/a	n/a
8	TEAD4	chr9:93880309-93880727	H1-hESC	embryonic stem cell:	n/a	chr9:93880522-93880531
9	USF2	chr9:93880432-93880773	Hela-S3	cervix:	n/a	chr9:93880595-93880606
10	USF1	chr9:93880298-93880847	H1-hESC	embryonic stem cell:	n/a	n/a
11	USF1	chr9:93880460-93880808	H1-hESC	embryonic stem cell:	n/a	n/a
12	E2F6	chr9:93880256-93880714	K562	blood:	n/a	chr9:93880578-93880587
13	MAX	chr9:93880208-93880841	H1-hESC	embryonic stem cell:	n/a	chr9:93880603-93880612 chr9:93880421-93880431 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
14	MAX	chr9:93879997-93880905	H1-hESC	embryonic stem cell:	n/a	chr9:93880603-93880612 chr9:93880421-93880431 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
15	SMC3	chr9:93880478-93880730	Hela-S3	cervix:	n/a	n/a
16	MAZ	chr9:93880340-93880826	K562	blood:	n/a	chr9:93880603-93880612 chr9:93880421-93880431 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
17	MAX	chr9:93880498-93880687	K562	blood:	n/a	chr9:93880603-93880612 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
18	RCOR1	chr9:93880538-93880706	Hela-S3	cervix:	n/a	n/a
19	USF2	chr9:93880301-93880783	H1-hESC	embryonic stem cell:	n/a	chr9:93880595-93880606
20	MAX	chr9:93880430-93880765	Hela-S3	cervix:	n/a	chr9:93880603-93880612 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
21	HMGN3	chr9:93880451-93880764	K562	blood:	n/a	n/a
22	TEAD4	chr9:93880379-93880736	H1-hESC	embryonic stem cell:	n/a	chr9:93880522-93880531
23	MAZ	chr9:93879825-93882671	IMR90	lung:	n/a	chr9:93880603-93880612 chr9:93880421-93880431 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
24	USF1	chr9:93880431-93880734	K562	blood:	n/a	n/a
25	RFX5	chr9:93880483-93880705	Hela-S3	cervix:	n/a	n/a
26	MXI1	chr9:93880498-93880668	H1-hESC	embryonic stem cell:	n/a	n/a
27	USF1	chr9:93880450-93880764	ECC-1	luminal epithelium:	n/a	n/a
28	POLR2A	chr9:93880528-93882783	IMR90	lung:	n/a	n/a
29	E2F6	chr9:93879842-93880893	H1-hESC	embryonic stem cell:	n/a	chr9:93880578-93880587 chr9:93879866-93879876
30	MAX	chr9:93880359-93880805	K562	blood:	n/a	chr9:93880603-93880612 chr9:93880421-93880431 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
31	USF1	chr9:93880492-93880771	ECC-1	luminal epithelium:	n/a	n/a
32	MAZ	chr9:93880465-93880752	Hela-S3	cervix:	n/a	chr9:93880603-93880612 chr9:93880595-93880606 chr9:93880598-93880614 chr9:93880591-93880610
33	SIN3A	chr9:93880439-93880661	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000229694	TF binding region

rs_ID	r²[population]
rs73650920	1.00[AFR][1000 genomes]

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93879600-93880800	Enhancers	Fetal Brain Male	brain
2	chr9:93879600-93881200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:93879600-93883200	Enhancers	Fetal Heart	heart
4	chr9:93879600-93883800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:93879800-93881000	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr9:93879800-93881000	Bivalent Enhancer	Fetal Thymus	thymus
7	chr9:93879800-93881200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:93879800-93881200	Flanking Active TSS	Fetal Muscle Trunk	muscle
9	chr9:93879800-93881200	Flanking Active TSS	Fetal Muscle Leg	muscle
10	chr9:93879800-93881200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr9:93879800-93881600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr9:93880000-93880800	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:93880000-93880800	Active TSS	Brain Anterior Caudate	brain
14	chr9:93880000-93880800	Active TSS	Brain Hippocampus Middle	brain
15	chr9:93880000-93880800	Active TSS	Brain Substantia Nigra	brain
16	chr9:93880000-93880800	Active TSS	Colonic Mucosa	Colon
17	chr9:93880000-93881000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:93880000-93881000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:93880000-93881000	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr9:93880000-93881000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr9:93880000-93881000	Enhancers	Spleen	Spleen
22	chr9:93880000-93881000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr9:93880000-93881200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:93880000-93881200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr9:93880000-93881600	Enhancers	Gastric	stomach
26	chr9:93880000-93881600	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr9:93880000-93881800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:93880000-93881800	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr9:93880000-93882400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr9:93880000-93883000	Enhancers	NHLF	lung
31	chr9:93880000-93883200	Enhancers	NHDF-Ad	bronchial
32	chr9:93880200-93880800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr9:93880200-93880800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
34	chr9:93880200-93880800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:93880200-93880800	Active TSS	Brain Angular Gyrus	brain
36	chr9:93880200-93880800	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr9:93880200-93880800	Active TSS	Fetal Kidney	kidney
38	chr9:93880200-93880800	Active TSS	Psoas Muscle	Psoas
39	chr9:93880200-93880800	Enhancers	Hela-S3	cervix
40	chr9:93880200-93881000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr9:93880200-93881000	Flanking Active TSS	Liver	Liver
42	chr9:93880200-93881000	Flanking Active TSS	Fetal Brain Female	brain
43	chr9:93880200-93881000	Flanking Active TSS	Right Ventricle	heart
44	chr9:93880200-93881000	Flanking Active TSS	HUVEC	blood vessel
45	chr9:93880200-93881200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr9:93880200-93881200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:93880200-93881200	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr9:93880200-93881400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr9:93880200-93881400	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr9:93880200-93881400	Enhancers	K562	blood

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