Variant report

Variant	rs611156
Chromosome Location	chr11:86209682-86209683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr11:86209583-86209917	Hela-S3	cervix:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86208558..86211731-chr11:86511256..86513544,4	MCF-7	breast:
2	chr11:86209651..86211899-chr11:86233390..86235647,2	MCF-7	breast:
3	chr11:86209598..86213474-chr11:86222640..86227259,4	K562	blood:
4	chr11:86209247..86211333-chr11:86213787..86215304,2	K562	blood:
5	chr11:86209488..86213127-chr11:86228780..86231761,3	K562	blood:

No data

Variant related genes	Relation type
ME3	TF binding region
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12804208	0.93[MKK][hapmap]
rs2105784	0.81[ASN][1000 genomes]
rs635637	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs669325	0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs611156	FAM181B	cis	cerebellum	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:86187600-86218600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:86188000-86210400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:86189200-86222600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:86189600-86221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:86195200-86222200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:86196200-86213600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:86198000-86211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:86198200-86210600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:86198600-86222800	Weak transcription	Esophagus	oesophagus
12	chr11:86201400-86210000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:86202400-86210000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:86202800-86226400	Weak transcription	Fetal Lung	lung
15	chr11:86204000-86222200	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:86204200-86210800	Weak transcription	Fetal Heart	heart
17	chr11:86204600-86220000	Weak transcription	Colonic Mucosa	Colon
18	chr11:86206600-86210200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:86206600-86210600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:86206800-86214200	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:86206800-86214600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:86206800-86214800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:86207000-86213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:86207800-86209800	Strong transcription	Stomach Smooth Muscle	stomach
25	chr11:86208600-86211600	Strong transcription	Brain Anterior Caudate	brain
26	chr11:86208800-86209800	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr11:86208800-86210200	Weak transcription	Stomach Mucosa	stomach
28	chr11:86208800-86210200	Weak transcription	HepG2	liver
29	chr11:86209000-86210200	Weak transcription	Right Ventricle	heart
30	chr11:86209000-86214400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:86209000-86214400	Weak transcription	HUVEC	blood vessel
32	chr11:86209200-86210200	Weak transcription	Hela-S3	cervix
33	chr11:86209200-86210800	Weak transcription	Pancreas	Pancrea
34	chr11:86209200-86211000	Weak transcription	Gastric	stomach
35	chr11:86209200-86211000	Weak transcription	Lung	lung
36	chr11:86209200-86211200	Weak transcription	Right Atrium	heart
37	chr11:86209200-86211800	Weak transcription	Fetal Brain Female	brain
38	chr11:86209200-86213000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:86209200-86213200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:86209200-86213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:86209200-86213400	Weak transcription	Adipose Nuclei	Adipose
42	chr11:86209200-86213800	Weak transcription	Ovary	ovary
43	chr11:86209200-86213800	Weak transcription	Spleen	Spleen
44	chr11:86209200-86214200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr11:86209200-86214400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:86209200-86214600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:86209200-86214600	Weak transcription	Osteobl	bone
48	chr11:86209200-86214800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:86209200-86215000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:86209200-86216600	Weak transcription	Fetal Stomach	stomach

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