Variant report

Variant	rs635637
Chromosome Location	chr11:86262426-86262427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2105784	0.84[ASN][1000 genomes]
rs611156	0.89[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86258800-86263400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:86258800-86263400	Enhancers	Fetal Brain Male	brain
3	chr11:86258800-86263400	Enhancers	Psoas Muscle	Psoas
4	chr11:86258800-86264600	Enhancers	Right Atrium	heart
5	chr11:86259000-86263200	Weak transcription	Brain Germinal Matrix	brain
6	chr11:86259200-86264400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:86259400-86262600	Weak transcription	Fetal Heart	heart
8	chr11:86259600-86262600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:86259600-86263000	Weak transcription	Fetal Thymus	thymus
10	chr11:86259600-86269800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:86259600-86270400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:86259600-86270800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:86259800-86270800	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:86260000-86262600	Weak transcription	Colonic Mucosa	Colon
15	chr11:86260000-86262800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:86260000-86263400	Weak transcription	Fetal Stomach	stomach
17	chr11:86260000-86264000	Enhancers	Fetal Intestine Small	intestine
18	chr11:86260000-86266200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:86260000-86268800	Weak transcription	Fetal Kidney	kidney
20	chr11:86260000-86270200	Weak transcription	Brain Angular Gyrus	brain
21	chr11:86260000-86270200	Weak transcription	Brain Substantia Nigra	brain
22	chr11:86260200-86264000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:86260400-86262600	Weak transcription	Aorta	Aorta
24	chr11:86260400-86263400	Enhancers	Colon Smooth Muscle	Colon
25	chr11:86260400-86264200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:86260800-86265000	Enhancers	Fetal Intestine Large	intestine
27	chr11:86260800-86265000	Enhancers	Left Ventricle	heart
28	chr11:86260800-86265000	Enhancers	Pancreas	Pancrea
29	chr11:86261000-86264000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:86261000-86265600	Weak transcription	Fetal Brain Female	brain
31	chr11:86261200-86270800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:86261400-86264200	Enhancers	Lung	lung
33	chr11:86261400-86264400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr11:86261400-86264400	Enhancers	Spleen	Spleen
35	chr11:86261600-86262600	Enhancers	Stomach Smooth Muscle	stomach
36	chr11:86261600-86263000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:86261600-86263200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:86261600-86263200	Enhancers	Gastric	stomach
39	chr11:86261600-86263200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:86261600-86263200	Enhancers	NHLF	lung
41	chr11:86261600-86263400	Enhancers	NH-A	brain
42	chr11:86261600-86265000	Enhancers	Right Ventricle	heart
43	chr11:86261800-86263400	Enhancers	Osteobl	bone
44	chr11:86261800-86264200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:86261800-86265000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr11:86262000-86263200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:86262000-86263200	Enhancers	Adipose Nuclei	Adipose
48	chr11:86262000-86263200	Enhancers	Small Intestine	intestine
49	chr11:86262000-86263400	Enhancers	Hela-S3	cervix
50	chr11:86262000-86263800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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