Variant report

Variant	rs61120573
Chromosome Location	chr1:160801412-160801413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57499617	1.00[EUR][1000 genomes]
rs59304310	1.00[EUR][1000 genomes]
rs6678254	1.00[EUR][1000 genomes]
rs74124288	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74124344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160771000-160806600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr1:160782600-160803200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:160783800-160803200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr1:160790600-160803000	Strong transcription	Primary T cells from cord blood	blood
5	chr1:160793000-160811600	Weak transcription	Gastric	stomach
6	chr1:160793400-160807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:160794000-160805800	Weak transcription	Thymus	Thymus
8	chr1:160794000-160806200	Weak transcription	Spleen	Spleen
9	chr1:160794200-160803000	Weak transcription	Fetal Thymus	thymus
10	chr1:160796800-160804800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:160797200-160805000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:160797600-160805000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:160797600-160805200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:160797800-160805600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr1:160798200-160803000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:160798200-160804600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:160798200-160805000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:160798200-160805000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr1:160798200-160805000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:160798200-160805600	Weak transcription	Primary B cells from cord blood	blood
21	chr1:160798400-160805000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:160798600-160805600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr1:160799000-160805200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr1:160800000-160803200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:160800200-160803000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr1:160800800-160803200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:160800800-160803400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr1:160800800-160805800	Weak transcription	GM12878-XiMat	blood
29	chr1:160801000-160803600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr1:160801400-160803200	Strong transcription	Primary T killer memory cells from peripheral blood	blood

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