Variant report

Variant	rs6678254
Chromosome Location	chr1:160847902-160847903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57499617	1.00[EUR][1000 genomes]
rs59304310	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61120573	1.00[EUR][1000 genomes]
rs74124288	1.00[EUR][1000 genomes]
rs74124344	1.00[EUR][1000 genomes]
rs74124345	1.00[EUR][1000 genomes]
rs74124348	1.00[EUR][1000 genomes]
rs74124356	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160834600-160849000	Weak transcription	Ovary	ovary
2	chr1:160846600-160849400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr1:160846800-160854200	Weak transcription	Fetal Intestine Small	intestine
4	chr1:160847200-160848400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:160847200-160852400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:160847400-160849200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:160847600-160848600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:160847600-160848600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:160847600-160848600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:160847600-160848800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:160847600-160848800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:160847600-160849200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:160847600-160853800	Weak transcription	Spleen	Spleen
14	chr1:160847800-160848200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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