Variant report
| Variant | rs61124787 |
|---|---|
| Chromosome Location | chr18:11693181-11693182 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:11665029..11667238-chr18:11692110..11694200,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1013459 | 0.84[ASN][1000 genomes] |
| rs16976596 | 0.92[ASN][1000 genomes] |
| rs17515304 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17515325 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1863122 | 0.84[ASN][1000 genomes] |
| rs2035194 | 0.84[ASN][1000 genomes] |
| rs2035195 | 0.84[ASN][1000 genomes] |
| rs28620345 | 0.92[ASN][1000 genomes] |
| rs57892223 | 0.84[ASN][1000 genomes] |
| rs61670374 | 0.84[ASN][1000 genomes] |
| rs6505670 | 0.84[ASN][1000 genomes] |
| rs71367576 | 0.92[ASN][1000 genomes] |
| rs7236433 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7237466 | 0.84[ASN][1000 genomes] |
| rs7237945 | 0.84[ASN][1000 genomes] |
| rs72881064 | 1.00[ASN][1000 genomes] |
| rs8085488 | 0.84[ASN][1000 genomes] |
| rs8087266 | 0.84[ASN][1000 genomes] |
| rs8087897 | 0.84[ASN][1000 genomes] |
| rs8090096 | 0.84[ASN][1000 genomes] |
| rs8096345 | 0.84[ASN][1000 genomes] |
| rs8098596 | 0.84[ASN][1000 genomes] |
| rs8099016 | 0.84[ASN][1000 genomes] |
| rs8099179 | 0.84[ASN][1000 genomes] |
| rs8099342 | 0.84[ASN][1000 genomes] |
| rs8099486 | 0.92[ASN][1000 genomes] |
| rs9303742 | 0.92[ASN][1000 genomes] |
| rs9966615 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066659 | chr18:11246502-11709409 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | esv3362008 | chr18:11647654-11959830 | Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 3 | nsv518207 | chr18:11670845-11695676 | Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv516128 | chr18:11683431-11695676 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:11690400-11694400 | Weak transcription | NHEK | skin |
| 2 | chr18:11690400-11713800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 3 | chr18:11690600-11695200 | Weak transcription | HMEC | breast |
