Variant report

Variant	rs1013459
Chromosome Location	chr18:11700534-11700535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11699500..11701594-chr18:11719121..11721912,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11872939	1.00[CHD][hapmap]
rs1477484	1.00[CHD][hapmap]
rs16976596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16976628	1.00[CHD][hapmap]
rs17515304	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17515325	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1863122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs2035194	0.85[ASN][1000 genomes]
rs2035195	0.85[ASN][1000 genomes]
rs28620345	0.92[ASN][1000 genomes]
rs4239300	1.00[JPT][hapmap]
rs57892223	0.85[ASN][1000 genomes]
rs61124787	0.84[ASN][1000 genomes]
rs61670374	0.85[ASN][1000 genomes]
rs6505670	0.85[ASN][1000 genomes]
rs7236433	0.84[ASN][1000 genomes]
rs7237466	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7237945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881064	0.84[ASN][1000 genomes]
rs8085488	0.85[ASN][1000 genomes]
rs8087266	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8087897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8090096	0.85[ASN][1000 genomes]
rs8096345	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8098596	0.85[ASN][1000 genomes]
rs8099016	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs8099153	1.00[CHD][hapmap]
rs8099179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs8099342	0.85[ASN][1000 genomes]
rs9303742	0.92[ASN][1000 genomes]
rs9303743	1.00[CHD][hapmap]
rs9676233	1.00[CHD][hapmap]
rs9946455	1.00[CHD][hapmap]
rs9966615	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv978602	chr18:11699589-11729341	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11690400-11713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:11696200-11713600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:11697400-11707800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr18:11697400-11727000	Weak transcription	Esophagus	oesophagus
5	chr18:11698000-11715000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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