Variant report

Variant	rs1477484
Chromosome Location	chr18:11781076-11781077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:11775931..11778532-chr18:11780159..11782113,2	MCF-7	breast:
2	chr18:11775863..11778120-chr18:11779319..11781169,2	K562	blood:
3	chr18:11776601..11778120-chr18:11779669..11782616,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1013459	1.00[CHD][hapmap]
rs10468679	1.00[CHB][hapmap]
rs10502413	1.00[CHB][hapmap]
rs11872939	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12458181	1.00[CHB][hapmap]
rs1424913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477941	1.00[CHB][hapmap]
rs1559579	1.00[CHB][hapmap]
rs16976628	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16976639	1.00[CHB][hapmap]
rs16976666	1.00[CHB][hapmap]
rs16976687	1.00[CHB][hapmap]
rs1834267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1941225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57958293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6505675	1.00[CHB][hapmap]
rs679246	1.00[CHD][hapmap]
rs7227117	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs73399842	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401824	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401826	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs787556	1.00[CHB][hapmap]
rs8087266	1.00[CHD][hapmap]
rs8096345	1.00[CHD][hapmap]
rs8098496	0.86[AFR][1000 genomes]
rs8099016	1.00[CHD][hapmap]
rs8099026	1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8099153	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9303743	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9646452	1.00[CHB][hapmap]
rs9675502	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9676233	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9946455	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9947295	0.85[CEU][hapmap]
rs9948287	0.82[CEU][hapmap]
rs9948889	0.83[LWK][hapmap]
rs9954486	1.00[CHB][hapmap]
rs9960175	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11758400-11785600	Weak transcription	Brain Anterior Caudate	brain
2	chr18:11767600-11785400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:11767600-11789000	Weak transcription	Esophagus	oesophagus
4	chr18:11767800-11783800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:11767800-11784000	Weak transcription	Aorta	Aorta
6	chr18:11771800-11783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:11773400-11784600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr18:11780200-11785400	Weak transcription	Ovary	ovary
9	chr18:11780800-11783200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:11781000-11783800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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