Variant report

Variant	rs10502413
Chromosome Location	chr18:11701777-11701778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10468679	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10468682	1.00[ASN][1000 genomes]
rs11872939	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12373424	1.00[ASN][1000 genomes]
rs12457247	1.00[ASN][1000 genomes]
rs12458181	1.00[CHB][hapmap]
rs1424913	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1477484	1.00[CHB][hapmap]
rs1477941	1.00[CHB][hapmap]
rs1559579	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16976625	1.00[ASN][1000 genomes]
rs16976628	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16976639	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16976666	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16976687	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1834267	1.00[ASN][1000 genomes]
rs1941225	1.00[ASN][1000 genomes]
rs28666369	1.00[ASN][1000 genomes]
rs28688137	1.00[ASN][1000 genomes]
rs28696966	1.00[ASN][1000 genomes]
rs56314648	1.00[ASN][1000 genomes]
rs56819096	1.00[ASN][1000 genomes]
rs56861220	1.00[ASN][1000 genomes]
rs57485078	1.00[ASN][1000 genomes]
rs57491632	1.00[ASN][1000 genomes]
rs57878458	1.00[ASN][1000 genomes]
rs57958293	1.00[ASN][1000 genomes]
rs58144032	1.00[ASN][1000 genomes]
rs58248860	1.00[ASN][1000 genomes]
rs58273499	1.00[ASN][1000 genomes]
rs58296571	1.00[ASN][1000 genomes]
rs58471713	1.00[ASN][1000 genomes]
rs58617475	1.00[ASN][1000 genomes]
rs58829911	1.00[ASN][1000 genomes]
rs58991912	1.00[ASN][1000 genomes]
rs59099814	1.00[ASN][1000 genomes]
rs59286339	1.00[ASN][1000 genomes]
rs59455765	1.00[ASN][1000 genomes]
rs59549445	1.00[ASN][1000 genomes]
rs59624432	1.00[ASN][1000 genomes]
rs59870994	1.00[ASN][1000 genomes]
rs59893403	1.00[ASN][1000 genomes]
rs59920321	1.00[ASN][1000 genomes]
rs60036326	1.00[ASN][1000 genomes]
rs60590666	1.00[ASN][1000 genomes]
rs61076914	1.00[ASN][1000 genomes]
rs6505675	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7227117	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7227259	1.00[ASN][1000 genomes]
rs73397831	1.00[ASN][1000 genomes]
rs73397852	1.00[ASN][1000 genomes]
rs73397857	1.00[ASN][1000 genomes]
rs73397859	1.00[ASN][1000 genomes]
rs73397874	1.00[ASN][1000 genomes]
rs73399817	1.00[ASN][1000 genomes]
rs73399822	1.00[ASN][1000 genomes]
rs73399842	1.00[ASN][1000 genomes]
rs73401824	1.00[ASN][1000 genomes]
rs73401826	1.00[ASN][1000 genomes]
rs73401832	1.00[ASN][1000 genomes]
rs73401838	1.00[ASN][1000 genomes]
rs73401844	1.00[ASN][1000 genomes]
rs73403525	1.00[ASN][1000 genomes]
rs73403531	1.00[ASN][1000 genomes]
rs73403540	1.00[ASN][1000 genomes]
rs73403565	1.00[ASN][1000 genomes]
rs73403569	1.00[ASN][1000 genomes]
rs73403571	1.00[ASN][1000 genomes]
rs73405491	1.00[ASN][1000 genomes]
rs73405493	1.00[ASN][1000 genomes]
rs73407408	1.00[ASN][1000 genomes]
rs73407416	1.00[ASN][1000 genomes]
rs73407420	1.00[ASN][1000 genomes]
rs73407440	1.00[ASN][1000 genomes]
rs787556	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8085783	1.00[ASN][1000 genomes]
rs8089494	1.00[ASN][1000 genomes]
rs8095571	1.00[ASN][1000 genomes]
rs8095793	1.00[ASN][1000 genomes]
rs8098587	1.00[ASN][1000 genomes]
rs8099026	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8099153	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9303743	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303752	1.00[ASN][1000 genomes]
rs9646452	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9675502	1.00[ASN][1000 genomes]
rs9675734	1.00[ASN][1000 genomes]
rs9675736	1.00[ASN][1000 genomes]
rs9675750	1.00[ASN][1000 genomes]
rs9676233	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9676238	1.00[ASN][1000 genomes]
rs9946157	1.00[ASN][1000 genomes]
rs9946455	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9948287	0.82[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9954486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9960175	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs9962057	1.00[ASN][1000 genomes]
rs9963594	1.00[ASN][1000 genomes]
rs9967080	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv978602	chr18:11699589-11729341	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11690400-11713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:11696200-11713600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:11697400-11707800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr18:11697400-11727000	Weak transcription	Esophagus	oesophagus
5	chr18:11698000-11715000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:11701600-11702000	Enhancers	Fetal Thymus	thymus
7	chr18:11701600-11702400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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