Variant report

Variant rs9946455
Chromosome Location chr18:11873358-11873359
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:11852400-11880800 Weak transcription Aorta Aorta
2 chr18:11853600-11883800 Weak transcription Ovary ovary
3 chr18:11853800-11884200 Weak transcription Brain Substantia Nigra brain
4 chr18:11854000-11875000 Weak transcription Brain Hippocampus Middle brain
5 chr18:11854000-11884200 Weak transcription Brain Angular Gyrus brain
6 chr18:11854800-11889200 Weak transcription Fetal Brain Male brain
7 chr18:11855400-11875400 Weak transcription Fetal Stomach stomach
8 chr18:11855600-11880800 Weak transcription Fetal Brain Female brain
9 chr18:11857800-11875200 Weak transcription Brain Germinal Matrix brain
10 chr18:11857800-11876400 Weak transcription Brain Cingulate Gyrus brain
11 chr18:11858200-11884000 Weak transcription Colon Smooth Muscle Colon
12 chr18:11858600-11875800 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr18:11858600-11879400 Weak transcription Adipose Nuclei Adipose
14 chr18:11859000-11886400 Weak transcription H1 Cell Line embryonic stem cell
15 chr18:11859200-11875600 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr18:11860200-11875200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr18:11860200-11875400 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr18:11861000-11880800 Weak transcription Esophagus oesophagus
19 chr18:11861600-11873400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr18:11861800-11887800 Weak transcription Psoas Muscle Psoas
21 chr18:11862400-11879200 Weak transcription Spleen Spleen
22 chr18:11865400-11874200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr18:11866400-11873400 Weak transcription Stomach Smooth Muscle stomach
24 chr18:11867200-11884000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr18:11867200-11884400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr18:11867400-11880800 Weak transcription Duodenum Mucosa Duodenum
27 chr18:11868200-11875400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr18:11868600-11873600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr18:11868800-11873400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr18:11868800-11877600 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr18:11869000-11874000 Weak transcription H9 Cell Line embryonic stem cell
32 chr18:11869000-11875600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr18:11869000-11876000 Weak transcription iPS-20b Cell Line embryonic stem cell
34 chr18:11869000-11877800 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr18:11869000-11877800 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr18:11871200-11875400 Weak transcription Brain Inferior Temporal Lobe brain
37 chr18:11871600-11884000 Weak transcription Colonic Mucosa Colon
38 chr18:11871600-11884200 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr18:11871800-11874600 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr18:11871800-11875200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr18:11871800-11884400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr18:11871800-11885000 Weak transcription NHEK skin
43 chr18:11872400-11875000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr18:11872400-11884400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr18:11872400-11884400 Weak transcription Hela-S3 cervix
46 chr18:11872600-11873400 Genic enhancers Skeletal Muscle Male skeletal muscle
47 chr18:11872600-11875200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr18:11872800-11874200 Strong transcription Brain Anterior Caudate brain
49 chr18:11872800-11880800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr18:11873000-11875400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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