The 2.0 version of rSNPBase

Variant report

Variant rs7227117
Chromosome Location chr18:11733374-11733375
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:11732400-11734800 Weak transcription Right Atrium heart
2 chr18:11732800-11733400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
3 chr18:11732800-11733400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr18:11732800-11733400 Active TSS Brain Dorsolateral Prefrontal Cortex brain
5 chr18:11732800-11733600 Enhancers Primary B cells from peripheral blood blood
6 chr18:11733000-11733400 Enhancers Brain Germinal Matrix brain
7 chr18:11733000-11733400 Active TSS Duodenum Smooth Muscle Duodenum
8 chr18:11733000-11733400 Bivalent Enhancer Fetal Muscle Leg muscle
9 chr18:11733000-11733600 Bivalent/Poised TSS Primary T cells from cord blood blood
10 chr18:11733000-11733600 Active TSS Ovary ovary
11 chr18:11733200-11733400 Enhancers HUES6 Cell Line embryonic stem cell
12 chr18:11733200-11733400 Flanking Bivalent TSS/Enh IMR90 fetal lung fibroblasts Cell Line lung
13 chr18:11733200-11733400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
14 chr18:11733200-11733400 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
15 chr18:11733200-11733400 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
16 chr18:11733200-11733400 Flanking Bivalent TSS/Enh Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr18:11733200-11733400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
18 chr18:11733200-11733400 Bivalent Enhancer Primary T cells fromperipheralblood blood
19 chr18:11733200-11733400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
20 chr18:11733200-11733400 Bivalent Enhancer Muscle Satellite Cultured Cells --
21 chr18:11733200-11733400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
22 chr18:11733200-11733400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
23 chr18:11733200-11733400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr18:11733200-11733400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
25 chr18:11733200-11733400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
26 chr18:11733200-11733400 Flanking Bivalent TSS/Enh Colonic Mucosa Colon
27 chr18:11733200-11733400 Active TSS Colon Smooth Muscle Colon
28 chr18:11733200-11733400 Flanking Bivalent TSS/Enh Fetal Muscle Trunk muscle
29 chr18:11733200-11733400 Enhancers Pancreas Pancrea
30 chr18:11733200-11733400 Enhancers Psoas Muscle Psoas
31 chr18:11733200-11733400 Flanking Active TSS Rectal Mucosa Donor 31 rectum
32 chr18:11733200-11733400 Flanking Active TSS A549 lung
33 chr18:11733200-11733400 Flanking Active TSS GM12878-XiMat blood
34 chr18:11733200-11733400 Flanking Active TSS HSMM muscle
35 chr18:11733200-11733400 Flanking Active TSS HUVEC blood vessel
36 chr18:11733200-11733400 Bivalent/Poised TSS NH-A brain
37 chr18:11733200-11733400 Enhancers NHEK skin
38 chr18:11733200-11733600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr18:11733200-11733600 Bivalent/Poised TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr18:11733200-11733600 Bivalent/Poised TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr18:11733200-11733600 Active TSS Breast Myoepithelial Primary Cells Breast
42 chr18:11733200-11733600 Bivalent Enhancer Primary monocytes fromperipheralblood blood
43 chr18:11733200-11733600 Enhancers Primary T regulatory cells fromperipheralblood blood
44 chr18:11733200-11733600 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
45 chr18:11733200-11733600 Bivalent/Poised TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr18:11733200-11733600 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr18:11733200-11733600 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr18:11733200-11733600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
49 chr18:11733200-11733600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr18:11733200-11733600 Flanking Bivalent TSS/Enh Adipose Nuclei Adipose

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Last update: Aug 31, 2015