Variant report

Variant	rs8095793
Chromosome Location	chr18:11769593-11769594
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11768539..11770785-chr18:11848964..11851728,2	K562	blood:

Variant related genes	Relation type
ENSG00000255112	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10468679	1.00[ASN][1000 genomes]
rs10468682	1.00[ASN][1000 genomes]
rs10502413	1.00[ASN][1000 genomes]
rs11872939	1.00[ASN][1000 genomes]
rs12373424	1.00[ASN][1000 genomes]
rs12457247	1.00[ASN][1000 genomes]
rs1424913	1.00[ASN][1000 genomes]
rs1559579	1.00[ASN][1000 genomes]
rs16976625	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976628	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976639	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976666	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976687	1.00[ASN][1000 genomes]
rs1834267	1.00[ASN][1000 genomes]
rs1941225	1.00[ASN][1000 genomes]
rs28666369	1.00[ASN][1000 genomes]
rs28688137	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28696966	1.00[ASN][1000 genomes]
rs56314648	1.00[ASN][1000 genomes]
rs56819096	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56861220	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485078	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57491632	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57878458	1.00[ASN][1000 genomes]
rs57958293	1.00[ASN][1000 genomes]
rs58144032	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58248860	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58273499	1.00[ASN][1000 genomes]
rs58296571	1.00[ASN][1000 genomes]
rs58471713	1.00[ASN][1000 genomes]
rs58617475	1.00[ASN][1000 genomes]
rs58829911	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58991912	1.00[ASN][1000 genomes]
rs59099814	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59286339	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59322585	1.00[ASN][1000 genomes]
rs59455765	1.00[ASN][1000 genomes]
rs59549445	1.00[ASN][1000 genomes]
rs59624432	1.00[ASN][1000 genomes]
rs59870994	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59893403	1.00[ASN][1000 genomes]
rs59920321	1.00[ASN][1000 genomes]
rs60036326	1.00[ASN][1000 genomes]
rs60590666	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61076914	1.00[ASN][1000 genomes]
rs6505675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7227117	1.00[ASN][1000 genomes]
rs7227259	1.00[ASN][1000 genomes]
rs73397831	1.00[ASN][1000 genomes]
rs73397852	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73397857	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73397859	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73397874	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399817	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399822	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399842	1.00[ASN][1000 genomes]
rs73401824	1.00[ASN][1000 genomes]
rs73401826	1.00[ASN][1000 genomes]
rs73401832	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401838	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401844	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403525	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403531	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403540	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403565	1.00[ASN][1000 genomes]
rs73403569	1.00[ASN][1000 genomes]
rs73403571	1.00[ASN][1000 genomes]
rs73405491	1.00[ASN][1000 genomes]
rs73405493	1.00[ASN][1000 genomes]
rs73407408	1.00[ASN][1000 genomes]
rs73407416	1.00[ASN][1000 genomes]
rs73407420	1.00[ASN][1000 genomes]
rs73407440	1.00[ASN][1000 genomes]
rs787556	1.00[ASN][1000 genomes]
rs8085783	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8089494	1.00[ASN][1000 genomes]
rs8095571	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098587	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8099026	1.00[ASN][1000 genomes]
rs8099153	1.00[ASN][1000 genomes]
rs9303743	1.00[ASN][1000 genomes]
rs9303752	1.00[ASN][1000 genomes]
rs9646452	1.00[ASN][1000 genomes]
rs9675502	1.00[ASN][1000 genomes]
rs9675734	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9675736	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9675750	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9676233	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9676238	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946157	1.00[ASN][1000 genomes]
rs9946455	1.00[ASN][1000 genomes]
rs9948287	1.00[ASN][1000 genomes]
rs9954486	1.00[ASN][1000 genomes]
rs9960175	1.00[ASN][1000 genomes]
rs9962057	1.00[ASN][1000 genomes]
rs9963594	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967080	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv3422010	chr18:11765152-11769650	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3371529	chr18:11767777-11770325	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3382949	chr18:11768102-11770350	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3400151	chr18:11768552-11769800	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11752800-11774000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:11753000-11774800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr18:11753000-11775400	Weak transcription	Gastric	stomach
4	chr18:11758400-11785600	Weak transcription	Brain Anterior Caudate	brain
5	chr18:11763400-11780400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:11767600-11785400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr18:11767600-11789000	Weak transcription	Esophagus	oesophagus
8	chr18:11767800-11771400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:11767800-11783800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr18:11767800-11784000	Weak transcription	Aorta	Aorta
11	chr18:11768200-11772800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr18:11769400-11769600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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