Variant report

Variant	rs61140926
Chromosome Location	chr19:40585935-40585936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:40585888..40589214-chr19:40596351..40599925,3	K562	blood:
2	chr19:40585350..40590753-chr19:40593407..40597851,7	K562	blood:
3	chr19:40583256..40586703-chr19:40587520..40590311,6	K562	blood:

Variant related genes	Relation type
ENSG00000269749	Chromatin interaction
ENSG00000269296	Chromatin interaction
ENSG00000197782	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10421180	1.00[EUR][1000 genomes]
rs11882408	1.00[EUR][1000 genomes]
rs1972545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34873737	1.00[EUR][1000 genomes]
rs58341807	1.00[AMR][1000 genomes]
rs58675277	1.00[AMR][1000 genomes]
rs61149986	1.00[EUR][1000 genomes]
rs61208274	1.00[AMR][1000 genomes]
rs7247255	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7250697	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7252478	1.00[EUR][1000 genomes]
rs7256297	1.00[AMR][1000 genomes]
rs73543984	1.00[AMR][1000 genomes]
rs73545918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73549813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553624	1.00[AMR][1000 genomes]
rs73553657	1.00[AMR][1000 genomes]
rs73555546	1.00[AMR][1000 genomes]
rs73555594	1.00[AMR][1000 genomes]
rs73557743	1.00[AMR][1000 genomes]
rs8107448	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40578600-40586200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
2	chr19:40578600-40586600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:40578600-40586600	ZNF genes & repeats	Liver	Liver
4	chr19:40578600-40586600	ZNF genes & repeats	A549	lung
5	chr19:40578600-40586800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:40578600-40590400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:40578800-40586600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr19:40578800-40587200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr19:40579000-40586600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr19:40579000-40587000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:40579000-40587000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr19:40579200-40586600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr19:40579200-40586600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr19:40579200-40586800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:40579200-40586800	ZNF genes & repeats	GM12878-XiMat	blood
16	chr19:40579200-40589600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr19:40579400-40590400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr19:40579600-40586600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr19:40579600-40590800	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr19:40579600-40591200	Strong transcription	Fetal Thymus	thymus
21	chr19:40579800-40586800	Strong transcription	Fetal Brain Male	brain
22	chr19:40580000-40586600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:40580600-40591000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr19:40581600-40586600	ZNF genes & repeats	Fetal Brain Female	brain
25	chr19:40581800-40586200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr19:40581800-40587000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr19:40581800-40595600	Weak transcription	Stomach Mucosa	stomach
28	chr19:40582000-40586400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr19:40582000-40586600	ZNF genes & repeats	Dnd41	blood
30	chr19:40582000-40591200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr19:40582200-40588800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr19:40583000-40586200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:40583000-40595400	Weak transcription	NHLF	lung
34	chr19:40583200-40586200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr19:40583200-40587200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr19:40583200-40587400	Weak transcription	HUVEC	blood vessel
37	chr19:40583200-40588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:40583200-40588800	Weak transcription	Esophagus	oesophagus
39	chr19:40583200-40590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr19:40583200-40595400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr19:40583200-40595400	Weak transcription	Lung	lung
42	chr19:40583200-40595400	Weak transcription	Psoas Muscle	Psoas
43	chr19:40583200-40595400	Weak transcription	NH-A	brain
44	chr19:40583200-40596000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr19:40583400-40586000	Weak transcription	Osteobl	bone
46	chr19:40583400-40586200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr19:40583400-40586400	Weak transcription	Brain Substantia Nigra	brain
48	chr19:40583400-40586400	Weak transcription	Placenta	Placenta
49	chr19:40583400-40587200	Weak transcription	Gastric	stomach
50	chr19:40583400-40587800	Strong transcription	Rectal Smooth Muscle	rectum

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