Variant report

Variant	rs11882408
Chromosome Location	chr19:40416685-40416686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10421180	1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1972545	1.00[EUR][1000 genomes]
rs34873737	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61140926	1.00[EUR][1000 genomes]
rs61149986	1.00[EUR][1000 genomes]
rs7247255	1.00[EUR][1000 genomes]
rs7249716	1.00[MEX][hapmap]
rs7250697	1.00[EUR][1000 genomes]
rs7252478	1.00[EUR][1000 genomes]
rs7255186	1.00[CHD][hapmap]
rs73545918	1.00[EUR][1000 genomes]
rs73547678	1.00[EUR][1000 genomes]
rs73547690	1.00[EUR][1000 genomes]
rs73549813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329492	chr19:40198535-40437035	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2758498	chr19:40227904-40521130	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv2758760	chr19:40227904-40521130	Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv428022	chr19:40227904-40521130	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv2483	chr19:40340641-40435505	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv510766	chr19:40344356-40453018	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv482218	chr19:40353963-40440533	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1066339	chr19:40357018-40427903	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40402000-40419600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr19:40404600-40421000	Weak transcription	Fetal Intestine Small	intestine
3	chr19:40404800-40419600	Weak transcription	Fetal Intestine Large	intestine
4	chr19:40404800-40429600	Weak transcription	Primary B cells from cord blood	blood
5	chr19:40411600-40418000	Weak transcription	Fetal Stomach	stomach
6	chr19:40412200-40419600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:40412200-40427600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr19:40412400-40419600	Weak transcription	Colonic Mucosa	Colon
9	chr19:40412800-40417200	Enhancers	A549	lung
10	chr19:40413200-40418600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr19:40414400-40419400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr19:40414400-40433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr19:40414800-40418800	Weak transcription	Primary T cells from cord blood	blood
14	chr19:40416000-40418600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr19:40416000-40423200	Weak transcription	Stomach Mucosa	stomach
16	chr19:40416600-40416800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr19:40416600-40416800	Strong transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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